RNA id: TCONS_00005109


Basic Information

Item Value
RNA id TCONS_00005109
length 1802
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_002758
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22960380 ~ 22970723 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTTATTTTGTATTCACATCACGCGCTTTGTATCATCCGCCCCTGTTTCACAGCCAGTCAGATCATTGCTAGCGAAGAGAAACGAGGAAAATGTACTGTGAACGGTCTTAGTATCGTGAAACTTTTAAAGAATTGGCATTGGCGTGTACAGTGAGAGTGTGTCTAGTTACTGATAAGAACAGACAGTTATAAAGTGAGCTTTGCCGGAAGACTTTCCTTCCAGCCAATACAGCCCGTCCTGCAGCAAACAACAGCGCAGAAAGCACATTGATTGGAGGCAGCTGACTTAAAGACATGACCGAAGTTCACATTAGTGACACATTATTCAACTGTTGTGGTGACCAAGCATTTTCTTTCGAAATGCCTTCAAAATGGGGGATTATGCTCGCTAAATCTCCGCAgtaaacagctgtgtgtgtgtgtgagtgattacCGGTGTTGAGTTTTTGCCGTTTCCGATCCAGAACAGCACTGGATAATGAAGCGGAGGAGCAGAGTTCGTGTTGCGGTGATAGGAGCCGGAGCGGCGGGCCTTTGCGCTGCTCGACATGTCCTGTCCAAACCGGAAACCTTTGACCCACCCGTGCTGTTTGAAATGACCAATCATTTGGGTGGGACCTGGTTCTATGAGGAACGAGTGGGTACATATGACAATGGGTATCCCATCCACAGCAGTATGTACAGGGACCTtagGACCAACTTGCCCAAGGAGATAATGATGTTCCCTGATTTTCCCTTTGATGACCACCTGCCTTCTTTTTTGCACCACACTTCAGTTCAGCAGTATTTGGAAAAATACTGTGAGAAATATGACATTGCTCATCATATCAAGTTCAACACCGTGGTGGAAAAGGTGAAGCCCATCTCCATGGCAACCGAGACGGGGGGAGCTGTGACGTGGGAAGTAATTTCGCGCAGCACATGTGGAGAGCAGAACATGCAGACGTTCAACTCAGTGTTCGTCTGCAACGGGCATTACTCCGACCCCCACCTGCCCTACATTCCTGGAATAGAGCATTTTAAAGggAAAGTCTTACACAGCCACTCGTACCGCCATCCAGAGCCCTTCACCAATAAGTCTGTTGTGGTCTTGGGGGCCAAAGCATCTGGCGTGGACATTTCGATAGAGTTAGCCCAAGTTAACGCTCAGGTGATTCTCAGTCATAACACACCAACTGTGTCCTTACCTCCACCTTTGGGCATCCGGCAGGCCAGCGCTGTTGTTGGTGTTTTGGAGGATGGCTCTTTACAGTTCCAGGATGGATCAGTGACCCGGGCAGATATTCTTCTCTTCTGTACAGGATACAACTTTAACTTCCCTTTCCTCTCTCCATCAGAGCTTGCCCTGGACATACAAGACCTTTTAGTGGCTCCTCTATATAAATACCTGCTGCCCCCTAGCTTTCCTTCCattttttttattggtatttgcaaaattatttgccccttcatACATTTTGACTGTCAGGTTAAATTTGCTCTTGCTGTTCTGGAGGGCTTGATAAAACTGCCCACCCAGGAAGAGATGGAGATGGAGGTACATGGAGAGATGCaaagaaaacaagacaaaggTGTGCAGATGAAGCACCTGCTCAATTTGGACAGGGATCAGTGGGGTTATTACCTAGATCTGGCCAAGATGGGCCAATTCACACCTCCTCTGGCTGTGCTTGAGAGTCTGTATGAGGAGGTACGCAGACAGAGGCAGAAAGACCCGCAGAAATACAGACTCCTTAACTATAGGCTCATTGACGCCACACAGTGGGAGCTTTTGGAAGCTCCGTCTGAACAAGCAGATTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000100802

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006042 lncRNA downstream 48706 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006041 lncRNA downstream 352665 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006040 lncRNA downstream 393172 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006039 lncRNA downstream 425456 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00005093 lncRNA downstream 468922 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006043 lncRNA upstream 542399 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006044 lncRNA upstream 547338 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00006045 lncRNA upstream 578253 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006046 lncRNA upstream 809819 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005116 lncRNA upstream 963055 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00005108 mRNA downstream 42166 22916113 ~ 22918214 (-) True XLOC_002757
TCONS_00005107 mRNA downstream 48125 22907351 ~ 22912255 (-) False XLOC_002756
TCONS_00005106 mRNA downstream 105622 22848556 ~ 22854758 (-) True XLOC_002755
TCONS_00005105 mRNA downstream 114895 22838364 ~ 22845485 (-) True XLOC_002754
TCONS_00005103 mRNA downstream 132078 22812524 ~ 22828302 (-) False XLOC_002753
TCONS_00005111 mRNA upstream 100018 23070741 ~ 23099809 (-) False XLOC_002759
TCONS_00005112 mRNA upstream 100029 23070752 ~ 23099869 (-) False XLOC_002759
TCONS_00005113 mRNA upstream 100551 23071274 ~ 23099851 (-) True XLOC_002759
TCONS_00005114 mRNA upstream 245955 23216678 ~ 23379146 (-) False XLOC_002760
TCONS_00005115 mRNA upstream 249778 23220501 ~ 23358357 (-) True XLOC_002760
TCONS_00005104 other downstream 128951 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 208032 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 688477 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 1053275 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 1386974 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005129 other upstream 1406694 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1412543 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1484893 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 2523450 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 3161746 26132469 ~ 26141081 (-) False XLOC_002799

Expression Profile

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