RNA id: XM_021585667.2


Basic Information

Item Value
RNA id XM_021585667.2
length 1752
RNA type mRNA
GC content 0.52
exon number 11
gene id mocs1
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 11251835 ~ 11301417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATCCAAGTGTTGCGAACGCCAttataccatagaagaagaagaactacACTACCCAGAGGGTAGAGGATTTAGACGATTGGCTGAAGCTGCCCACTCCCCCTTGAATGTGGTTACAGCAACTCCGTAGACGTTATGTGAGGCTTCGATATTATTAACTTTCTTTGTTTGACACTTCTAGGACGATAAACAGATATTCCAACAGTTAATATACATTTATAACATGGCTTTTCATGGTAGCAAGTGCTGCCGCTTTATAGTAGGCAGACATTACGATGTCAAGGCCCTGTCAACGCAGCGCGTGAAACTATTTGTACCAAGCTCAACACCCAAGTTGCTGCGGTGGTATTCCAGCGCAACACAAGAGGAAAATGAACTTGAACTCGTATCTCTTGCAAACTCAAGTGCAGCTGTCCCTGCAACAAAAATTGGGACGACACAGGAGCTGGCTGTACCAGTGGGCCAGAGGCAAAGGTTGAATGAGGAAGTTCTACCCTTCTCTGCCTTCCTGACAGACAACTTTGGCAGACAGCACAGCTACCTACGCATTTCCCTGACGGAGAAATGTAACCTTCGCTGTCAGTACTGTATGCCAGAAGAGGGGGTAAAGCTCACCCCTCGCGCTCAGCTCCTGTCTACTTCCGAGGTGCTGACCGTGGCCCAGCTGTTTGTACGAGAGGGTGTGGAGAAGATCCGCCTCACTGGGGGAGAACCTCTCATCCGACCAGACGTCCTGGACATCATCACGGAGCTGAGGAAGTTGGAGGGCCTGAAGACCATTGCTGTGACCACCAATGGAATGAACCTGGTGAGGCTGCTGCCTAAACTGAAGGAGGCTGGTCTGGACCTGCTCAACATCAGCCTGGACACCCTGGTGCCGGCTAAGTTTGAGTTCATCGTCCGGCGGAAAGGGTTCCACAAGGTCATGGAAGGTATTGACAAAGCCATTGAGATGGGCTATAACCCTGTCAAGGTCAACTGTGTTGTCATGCGGGGCCTCAACGAGGACGAGCTTCTGGACTTTGTGGCCCTGACAGAGAAGAAGCCTCTGGAAGTACGCTTCATTGAGTACATGCCCTTTGACGGTAACAAATGGAACTTCAAGAAGATGGTGAGCTACCAGGAGATGCTGGACCGCATTAGACAGCAGTGGCCCAGTTTGGAACAGCTTCCACTCGGAAAGACGGACACAGCCAAgACATTTAAGGTGCCAGGCTTTCAGGGCCAGGTGGGCTTCATCACCTCCATGTCGGATCAATTCTGTGGCTCCTGCAACCGACTACGCATCACGGCAGACGGCAACCTCAAGGTGTGTCTGTTTGGGAATACGGAGGTGTCCCTGAGAGACGTTCTGCGCTCTGGAGCTTCTGACCAGAAGCTGCTGGATATCATTGGTGCCGCCGTGGGCAGGAAGAAGAAACAACATGCAGGCATGTTCAGCATCTCCCAGATGAAGAACAGACCCATGATCCTCATCGGTGGGTGACGCGACTACACCACACCCCAAAGGCCCCTGTCCCTGCCCAAGTCCAGAGTCTGCCAGTGGTCCTCCCTCCCCTCGTCTATATCCCAGATCCTGCAGTCCTCACCTCCGCTATGGCCCTCCAACTGTACCACTCCAGAAGTGGAAGTGGCCAACCCAATAAGGATGTATCGTGCCATTCCGGCTAGACAGTTTTAACAGTGCTGCCTGATGCCAGCTGTTCGGGAACCCACCAGTGTGGAAGGAGCCCTCAGTGGTTCCATATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2285365 lncRNA downstream 54826 11198918 ~ 11199469 (-) True G1996810
TU2285362 lncRNA downstream 57093 11196928 ~ 11197202 (-) True G1996807
TU2285360 lncRNA downstream 57931 11196052 ~ 11196364 (-) True G1996805
TU2285224 lncRNA downstream 171470 11055772 ~ 11082825 (-) True G1996671
TU2285268 lncRNA downstream 201160 11052863 ~ 11053135 (-) True G1996714
TU2285459 lncRNA upstream 47675 11349092 ~ 11416113 (-) True G1996901
TU2285538 lncRNA upstream 140968 11442385 ~ 11442588 (-) True G1996980
TU2285645 lncRNA upstream 146539 11447956 ~ 11527922 (-) True G1997082
TU2285713 lncRNA upstream 229576 11530993 ~ 11536751 (-) True G1997147
TU2285799 lncRNA upstream 312886 11614303 ~ 11614550 (-) True G1997232
XR_005039938.1 mRNA downstream 205723 11048419 ~ 11048572 (-) True LOC118944586
XM_021585670.2 mRNA downstream 267680 10882204 ~ 10986615 (-) True kif6
XM_021585497.2 mRNA downstream 380534 10774046 ~ 10873761 (-) True LOC110506078
XM_021585498.1 mRNA downstream 520357 10693574 ~ 10733938 (-) True kcnk17
XM_021585671.2 mRNA downstream 608413 10588470 ~ 10645882 (-) True kcnk5a
XR_005039835.1 mRNA upstream 21751 11323168 ~ 11325682 (-) True LOC118944497
XM_021585690.2 mRNA upstream 736715 12038132 ~ 12419690 (-) True LOC110506257
XM_021585691.2 mRNA upstream 1268780 12570197 ~ 12616544 (-) False LOC110506258
XM_021585692.2 mRNA upstream 1268780 12570197 ~ 12616546 (-) False LOC110506258
XR_005039673.1 mRNA upstream 1301748 12603165 ~ 12616568 (-) False LOC110506258
TU2285182 other downstream 329762 10922016 ~ 10924533 (-) True G1996632
TU2283174 other downstream 1752642 9500716 ~ 9501653 (-) True G1994812
TU2283141 other downstream 1805801 9447593 ~ 9448494 (-) True G1994786
TU2282985 other downstream 2073590 9177038 ~ 9180705 (-) True G1994674
TU2282921 other downstream 2146136 9093080 ~ 9108159 (-) True LOC110516734
TU2285507 other upstream 116682 11418099 ~ 11418335 (-) True G1996949
TU2288512 other upstream 2035918 13337335 ~ 13338151 (-) True G1999856
TU2288641 other upstream 2219269 13520686 ~ 13521520 (-) True G1999980
TU2288713 other upstream 2328367 13629784 ~ 13630075 (-) True G2000052
TU2289555 other upstream 2976724 14278141 ~ 14278746 (-) True G2000879

Expression Profile