RNA id: XM_021585698.2


Basic Information

Item Value
RNA id XM_021585698.2
length 7708
RNA type mRNA
GC content 0.52
exon number 35
gene id LOC110506264
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 12776493 ~ 12835289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agactacggtttgcaactggacaTGGAGACTAAGATCATACCAAAAAAATGTATGGTTTATTTGCTacgtgaggtttatttgatcgaatagacGTTTCGTAATGCATAATACGAGTGTACTGAcataagtaggacacgtgacatcctgGCAACTGAGAAAAAAACACTTAATTTCGGAGTTGTTTCGAGAATGCATATTCATGATTGAGGCAAGTAGCATAGCGTCTCTCTCCAATGAACACAGGAGGTTGACCTCAACAACCCTCATCGAATATTTAAGTTAAAGGCCCAacggggtgtggtatatggcccatataccacggctaagggctgttcttaggcatgactcaaagccgtggtatattagccatacaCCACAAACCCTGAGGTTCTTTATTGCTATCATAAACGTAATTAgggcagtaaaaatacatgttttgtcacacCCATTATATATGGTTTGATATACCACGgcggtcagccaatcagcattcagggatcgaaccacacagtttataattCAAAATAGGTTACAAAAATTAGATGTGGTGGataccaatccaaagaaaggataggcgGGAGCTAAACGGTGCGCCgtgccgctttgtggacaacgactGCCATTGTTCGGGCGGATAGACAAGTctcttgtcagtatatccataatctttgcTTGAAAAGAACGTTGTCAGAGGGCAGACTTTCGAAAAGCTTCTGGACAGTGCGAGAGCCTTCACGAACAGAAAGGGAAGAGAAAGCATGGCTTTAAACCTTACCATCAACAGTAGCAACCCTCCTTTAGGGGCGCTGTTGGCAGCCGAGCATGTGAAGGGCAGCGTGAACTTGTCTGTGGATGAGGGCAAAGACAACAAGCTCCGTGTCTCAGAgtcAGTGCAGTTCAGCGACGTGAACTCCATCACGCGCTACCTTGCCCGTGTGACTCCCACTCTGAGCTTGTACGGCTCCAACATGCTGGAACAAACTGAGgtggacCACTGGATGGAGTTCAGTACGCGGCGCGTGTGTGGCCAGTCGGGCCTAGCTACGGCCCTGGGGGAGCTGGACATGGCCTTGGCTCTGCGCACATTCCTGGTGGGCCACAGCCTGACTCTGGCCGACCTGTGTGTGTGGGCCGCGCTCAAAGGTAGCAACGAGTGGCAGTCAATCCAGAAGCAGGCGGGGTTGTTCTCTCACGTGGCTCGCTGGTTTTCATTCCTGGGCTCCCAGGTACCCTTTACTGCAGTGGGCAACAAGTATGCCAACAGCAAGGCCCCTCCTCGCAAGTCCGATGAGAAGAAGCAGGACTTGGGCAAGTTTGTGGAATTGCCCGGAGCCGAGATGGGAAAAGTGGTGGTTCGCTTCCCCCCTGAGGCCAGCGGGTACCTGCACATTGGCCACGCCAAGGCTGCCCTGCTCAACCAGCACTACCAGGTGACATTCAAGGGCAAGCTCATCATGCGCTTTGACGACACCAACCccgagaaggagaaggaggacttTGAGAAGGTGATCCTGGAGGACGTGGCCATGCTGCAGATCAAGCCTGACCAGTTCACCTACACCAGCGACCATTTCCCTCGCATCCAGGGCATGGCGGAGCAGCTGCTGAGGGAGGGCAAGGCCTACATCGACGACACACCCCCAGAACAGATGAAGGCGGCGAGGGAACAGCGCACCGAGTCCCGCCACCGCAGCAACTCGGTGGAGGAGAACCTGAAGATGTGGGAGGAGATGAAGGCGGGCACGGAGTACGGCCAGACGTGCTGCATGCGGGCCAAGATTGACATGGCCTCCAACAACGGCTGCATGCGCGACCCCACCCTCTACCGCTGTAAGAATGCCCCCCACCCCCGCACTGGCAGCACCTACAGGGTGTACCCCACGTACGACTTTGCCTGCCCCATCGTTGACAGTGTGGAGGGCGTGACTCATGCGCTGCGCACAACAGAGTACCACGATCGCGACGACCAGTTCTACTGGGTGATCGAGGCGTTGCGTCTGCGCAAGCCCTACATCTGGGAGTACGCCCGGCTCAACCTCAACAACACTGTGCTCTCCAAGCGCAAGCTCACCTGGTTCGTTGACCAGGGCTACGTCGATGGCTGgGACGACCCTCGCTTCCCAACTGTCAGAGGTGTCCTGCGCAGAGGAATGACCGTCGAGGGCCTCAAGCAGTTCATCGctgcccagGGTGGATCCAGGTCCGTGGTCAACATGGAATGGGACAAGATCTGGGCCTTCAACAAGAAGCTGCCAATTAGCTGTATCAAGATTATCGACCCAGTGGCCCCCAGATACACGGCCCTGTCAGGATCCTACTCAGTCCCTGTTGTCATCCCTGAGGCAACAGAGGAGATGAAGGAGGCCGTCAAACACCCCAAGAACACAGAGGTGGGGATGAAAGAGGTGTGGTACGGACCCAGGGTGCTGGTGGAGGGGGCAGATGCAGAGACCTTCACAAAGGGAGAGATAGTCACCTTCATCAACTGGGGAAACATCATCATCACCCAGATCCACAAAGATGCCAGTGGTAAGGTCACCTCCCTGGACGGAAAACTGAACCTGGAGAACAAGGACTACAAGAAGACCACCAAGATCACGTGGCTGGCCGAGACCCCCCGCGCGCCCCTGCTGCCCACCGTCTGCGTTAACTACCAGCACCTCATCACCAAGCCTGTCATAGGCAAGGAGGATGACTTCAAGGAGTACATCAACAAACAGAGCAAGCTGGAGGAGAAGATGCTGGGTGACCCCTGTCTGAAGGACCTGAAGAAGGGTGACATCATCCAGCTGCAGAGGCGGGGCTTCTACATCTGTGACCAGCCCTACGAGCCAATCAGTCCCCACAGCTGTAAGGAGAGTCCCTGTGTGCTGCTGTTCATCCCCGATGGCCACACCAAGGAGATGCCCACCGCTGGCTCCAAGGAGAAGTGCaaggccaccaccaccacaGTTCCCTTCCCAGCCACGTGCAAAGGCGCTCCCATCTCTGCCCCAGCTAGCGATGCCTGCGCCATTTTCTCCGGCATCGTGGCTCAAGGTGAGAAGGTACGCGATCTGAAAACCACCAAGGCCCCCAAGGAGAAGGTGGACAAAGTGGTAAAGGAGCTGCTGTCACTCAAGGCCCAGTTCAAGCAGCTGACTGGCCAGGACTACAAACCAGGCATGGCTCCATCCGCCAGCTCCACCACTCAGAAGGCCGCAACCCCCGCACCTTCTGCTGACTCCATCTCCTGCCCCTTTGCTTGCATCACCCAGCAGGAGGAGCTGAAGTCTGAGAAGGCTTCCAAGGTTGATGCTGTAGTCAAGCAGCTGCCGGATTTTAAAGCTGAGTTCCATCAGATCACAGGCAAGGAGTACAAGCCAGGGATGACCCCTCCTCCTGCTGCCCAAGCCaagactgctctctctgcctcatccgcctcatcctctccctcaggCCTATACGAACGTGTGACCGAACAGGGAGACACTGTGAGGAAGCTTAAATCTGAGAAATCAGCGAAGGACCAGGTTGATGCTGCGGTGAAGCAGCTCTTGGACTTGAAGGCAGAGTACAAACAGGCGACAGGTCAGGACTACAAGCCAGGAACTgccccagtccctgctgcagccCCAGTACAGAGCACCCAAGCCCCCACAGTCACATCTGGCTCAGGCGTCTATGAACATGTGACTCAGCAGGGTGACTTGGTGAGGAAGCTGAAAACTGAGAAGGCCCCCAAGGACCAGATGGACGCAGCCATCAAGCATCTGCTGTCCCTCAAAGCAGAGTACAAGCAGGTGACTGGCCAGGACTACAAACCAGGCATAGCCCCAGCCACCAGCCCTGCCCCTGTCCAGGCTAGCCCCGCCCCTGATGCCCAGTCTATCTCCTCCGTTAAGGCGCTCTTCTCCCAGGTGTCCCATCAGGGGGAGTTAGTGAGGAAGCTGAAGTCGGAGAAGGCTCCTAAGGACCAGCTGGACGGTGCCGTGAAGCAGCTTCTGGCCCTGAAGACCCAGTACAAGGCCCTCACAGGAGAGGAGTATAAACCTGTGGCTTCCGCCGGAGCCTCGGGCGGAGAGGACAAGAACCGCAAAGACCGAGAGAACAAGTCTGAGAAACAGGGAGGTGGTAGTggcggaggaggagggaagaagcAGCCTAAAGGAGACAAAATCAAGGAGGTCTCGTCGGGAGgcgcagggggaggaggagaggggggtccCAAGAAACAGACACGACTGGGACTGGAGGCTAAGAAGGAGGAGAACCTGTCTGATTGGTACTCTCAGGTGATCACTAAGGCGGAAATGATTGAGTACTACGATGTGAGCGGCTGCTATGTGCTGCGGCCCTGGTCATACTCCATCTGGGAGTCCATCAAGGAGTTTGTTGACCGCGAGATCAAGAAGTTGGGCGTGGAGAACTGCTACTTCCCCATGTTTGTCTCACAGGCTGCCCTAGAGAAGGAGAAGTCCCACATCGCAGATTTTGCCCCTGAGGTCGCCTGGGTGACGCGGTCAGGGAACACTGAGCTTGCCGAGCCCGTCGCTATTCGACCCACTAGTGAAACTGTGATGTACCCTTCCTATGCCAAATGGGTCCAGTCCCACAGAGACCTCCCCATCAAACTCAACCAGTGGTGCAACGTTGTGAGGTGGGAGTTCAAGCACCCCCAACCCTTCCTGAGGACCAGAGAGTTCCTGTGGCAGGAGGGACACACGGCTTTCGCCACCAAAGAGGAGGCCACCGAAGAGGTGTTACAGATCCTGGACATGTATGCGCGAGTGTACGAGGAGCTCATGGCCATCCCCGTGGTAAAGGGCAGGAAGACTGAGAAGGAGAAGTTTGCCGGAGGTGACTACACTACCACCGTGGAGGCCTTCATCTCTGCCAGTGGCAGAGCCATCCAGGGCGCCACGTCCCATCACTTGGGACAGAACTTCTCCCGGATGTTTGAGATTGTGTTCGAGGACCCCAAGAAGCCAGGTGAAAAGCAGCTGGCATATCAGAACTCGTGGGGCATCACCACCCGCACCATCGGCGTACTCACCATGGTCCACGGTGACAACATGGGCCTGGTGCTGCCCCCCAAAGTCGCATGTCTCCAGGTGATCATCATCCCATGTGGTATCACGGCCTCCCTGCCCGAGGCTGAGAAAGAGGTTCTCTTGGCCCAGTGCTCCAAGTACCTGGCTCGGCTGCAGAGGGGAGAGATCCGAGTCAAGGCAGACCTCAGAGAAAACTACTCCCCTGGCTGGAAGTTCAACCACTGGGAGCTCAAGGGTGTGCCCATTCGTCTGGAAGTGGGTCCTAAGGACCTGAAGCAGGGTCAGTGTGTGGCCGTGAGGAGAGACACAGGGGAGAAGATCACCCTGCCCGAGGCCGACACAGAGAAGAGGCTCGCACAGCTACTGGAGGACATCCAGACCAACCTCTTCAAGAGGGCATCAGACGACTTGAACAAGCACATGGTGGTAGCAAACTCTATGGAACAGTTCCAGAGAGACCTGGACCAGGGCAGGATTGTCCAGATCCCCTTCTGTGGAGAAATTGAGTGTGAAGACTGGATCAAGAAGACCACTGCCAAGGACCAGGATCTGGAGCCCGGTGCCCCCTCCATGGGTGCAAAGAGCCTGTGTATCCCCTTCAAGCCCCTCAAGCCCCTGCAGCCGGGCCAGATGTGTGTCAGCGGCAAGGAGGCCGCCCAGTACTACACTCTGTTTGGCCGTAGCTACTAAATACACACCTGAAGGGTGTATCTCTGTCTGAAATTGCTTCCTCTCCTCGTCACTTCTCCTTTGTCTGGGAAATGTGAAGAACAAGATTGTTGAAAACCAAGAAATTCTCTGGGTTTTTCCCCCTATCATGCTCTTTCGAATGAGCAGAGATGAAGTcacttcagactattgagatATACCGAGTCAACACCCCATAGTGTGTTCCCTTTCTTTCAGCCCTTAACCATGTTGCAATGGTGGCCCAACCCCTTGAAAGTGACTAAAGAAAGGCACTCTCCGTAATCAACTATTATCTCCCCACTTGCCCTAAATGTAACACAAATGGCACGTTATTTAACCCggttacagtcttgtccctttctccctcccaccctaACTTATCTCAGGACCTTTTACAGGTATAAAAGATGTCCTTGTACTCAGGCAAGATGTTTTAGTACCTTCCCACTAACTgaactgacattgacccctctcTGTCATAGCAATTGGGGGTGGTGAGGGTTGTTTCCTGGAGGTTTTCGACACGTTATTCCGGTGTATTCCGGTGTATTCCGGTCATAGGAATACTcatagcccctctagtaatttaataggaacTATGTCATAAACAGCCCTCAAAGCTCCAGAATGTGGTTAAAATAGCAGCCATAGAAGCAGTAACAAGGTCAATGGATCTCaaccaaaacaatggaaatgcGTAGAGAAAAGATCTCAACTCTTCTCATTGCCCCCCAGCAAAATGTTCCTACTTTTAGGCTGTTATTGTGTATTTCACACTGTTGAGGTAAAACAAATATTAATAATCAACTGGATTTCAGTTAAAAACAATTGACTACCACCACCGATTTCTCTATGCTAGCTGTGCTACCAGCTTATACGAACGGGAGGTAGCATTTAGCAGTTacttcttctaaacctgaaaaggaactacttctaaatgttatgcagcgTAAACATCCAAATATATCCACATCTGCCTTTTAGTAACCACATTCTGGGCCGTACCTCGTCTACAATACATCAATAATGAGGGATTTGATGAATATCCACTTTGTTCGATCAGATTTGAATGTGCGTCAAGCCAACGTCCTTTTTATCCCCCACGGTCTgcgttccattgacctctttacccCATCTatattggtcagggagaaatccaaaccagtctaattgaAATTGATGGCAGTAGAGGCATAATCCTGATTTTTCTTATGCAGGAAAAGAAAAGTAAGGCATTTGATTTCAGAAATTGTGTATTAGAATTGTGAACTTAAAATATTGTAAAATAATTATAAGTATAGTTTTTATACGGGTTTACTGTGAATGCTGtgtataaatagcctctaaaaCAGGGCTGTCCAACTATTCCTGGAGAGGTTAGaggtaggtttttgctccaaccccagttgtaactaaaaGGATTccgcttatcaaccagctaattattttAATCAGttgcgctagattagggttggagtgaaaacctactggACAGTAGTGCTCCGGAAACATGGTTGGCGAGCCCTGCTCTATAATCTATATGGAAAAAGACCATAAATGTCTGCATttttgttttcttggaaagctgtgAGTGTTATTATATGATACCATGTCaatacttgttgcatttacaatTTTTTTGAGACaggctgtggattgactgcattgtttgaatggaatgttgtcatattggcagttaatttgaaaaatgtattgaatCATTCCTctgaagctggctagctaacaaacatacagtgcagatacattcttcaaattcattattttacactatcacagcactggcaaaccatggttggccacctccctgaccaaaatggccGACCTTCGTTCCACcataagaaggttcatgtccattctagcATCCTAATTCTATTGGAATACGTACTATGACATACCTGTACCGTAATCCCAACTCATGCAATTGTAGAACTTGTCTATAATAATAAAGGGAATTTCCACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2288157 lncRNA downstream 16765 12755464 ~ 12759728 (-) True G1999517
TU2288139 lncRNA downstream 31243 12745011 ~ 12745250 (-) True G1999505
TU2288136 lncRNA downstream 34222 12742070 ~ 12742271 (-) True G1999502
TU2288122 lncRNA downstream 62760 12713439 ~ 12713733 (-) True G1999488
TU2288111 lncRNA downstream 74461 12701700 ~ 12702032 (-) True G1999479
TU2288231 lncRNA upstream 72120 12907402 ~ 12954741 (-) True G1999586
TU2288257 lncRNA upstream 104222 12939504 ~ 12939821 (-) True G1999611
TU2288348 lncRNA upstream 250105 13085387 ~ 13085707 (-) True G1999697
TU2288425 lncRNA upstream 369411 13204693 ~ 13204918 (-) True G1999772
TU2288437 lncRNA upstream 389424 13224706 ~ 13225022 (-) True G1999784
XM_021585696.2 mRNA downstream 35550 12715303 ~ 12740943 (-) True LOC110506260
XM_021585693.2 mRNA downstream 88213 12675564 ~ 12688280 (-) True LOC110506259
XM_021585695.2 mRNA downstream 88359 12675564 ~ 12688134 (-) False LOC110506259
XM_021585694.2 mRNA downstream 88958 12675564 ~ 12687535 (-) False LOC110506259
XR_005039673.1 mRNA downstream 159925 12603165 ~ 12616568 (-) False LOC110506258
XM_021585702.2 mRNA upstream 10197 12845479 ~ 12856664 (-) True trmt61b
XM_036964283.1 mRNA upstream 1483022 14318304 ~ 14367960 (-) False LOC110506271
XM_036964284.1 mRNA upstream 1483022 14318304 ~ 14367960 (-) False LOC110506271
XM_036964282.1 mRNA upstream 1483022 14318304 ~ 14368872 (-) False LOC110506271
XM_036964285.1 mRNA upstream 1484925 14320207 ~ 14368873 (-) False LOC110506271
TU2285507 other downstream 1358158 11418099 ~ 11418335 (-) True G1996949
TU2285182 other downstream 1851960 10922016 ~ 10924533 (-) True G1996632
TU2283174 other downstream 3274840 9500716 ~ 9501653 (-) True G1994812
TU2283141 other downstream 3327999 9447593 ~ 9448494 (-) True G1994786
TU2282985 other downstream 3595788 9177038 ~ 9180705 (-) True G1994674
TU2288512 other upstream 502053 13337335 ~ 13338151 (-) True G1999856
TU2288641 other upstream 685404 13520686 ~ 13521520 (-) True G1999980
TU2288713 other upstream 794502 13629784 ~ 13630075 (-) True G2000052
TU2289555 other upstream 1442859 14278141 ~ 14278746 (-) True G2000879
TU2290186 other upstream 1797720 14633002 ~ 14633608 (-) True LOC110506276

Expression Profile