RNA id: TU2290184


Basic Information

Item Value
RNA id TU2290184
length 2991
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC110506276
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 14613586 ~ 14678505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taactgtgttggagctgtcaaatcggtgaTCATTGTCACGAAGCCTCACCCATTTAATTATTGTTTGAAGTTCAAAAAGAGAAAGTGTATGCTATATAGAAATCATATAGCACACAATAATACGTTCAAATTGAAAAGCATGAAacaaaataatgaggatttctatcaaCCTAATCAAggtgtagactgcatctcacatTCCGGTGTTCGAACTTGTAAACAGGGCTGCGTGGGGTTTATCTTAATGCGATtctgGTGTTGGCTGGCGCGGATCTGATATAATCTAGCCCTAAGTGTTGGCGTCATGTGTGTTTTCATCGTCTTCCACACACTTGACAGTGACCTGGACAAGAGTGGAATGCCAGACCCCTTACTCCCTAACCCCGAATCAACCAGCCTCCCTTCAGGCCTATGACAGAAATAATCCACCTATCACAACAACAATTTTCCTGCCATaatatcaccatctctctcctctctattcagcCATCTTTAATCATTTCTAATCACTGAGTGATTCCTTTCACAGATCAAACATTGTTTTTATATTAATACCAGTGTGTGCTGTTGTGTTATAGGTGAAGGTTAAAAACAATTTGTTGGCAATGATTCTCGGCGAGTATTTGAAGACAACCATTTAAAGGATGAGTGCAAAGTGGGTGTTACTTTGTGATCTGTGTTAACATAGGACACTGTGGGTGACTGTGTGCTTGTTTTTAGACAGCTAACTTATACTGTGCATTGCAGGGGCCAAGAATACTATAAATAATATAAATTCACTCAAATCTGCTACCCAGACATTCACACAATCACCGaagaggattttttattttttttaatgtataggAACATTTACCAAGTTTGTGTATAATCAGTGTTTGCATTGCCGATGAAtcacaaaatgtatttattgacAAGAAGAGGTCCTACCTGGTGTTTCCAGAGGGAAGAAAAGAGGTGTGACACAGCAGCACCAACTGAGCAGCTATTAGAGGGGTATGGTTTGATCCAGCCAATAAAGGCTTTCGATGATGCATTTGGTCCCTGTTCATttgagaatgagagggagagtcCTCCGTAACACTTTACTTAAGCCTGCAGGTAGAAGGCTTGCTTATCAGAAGTTATAAAGTATTATTACTACAGGCTTCCAGTAAAGTGTTTACGGAGTCCTTTTCTCAACACTAGGGATGTGTTGAGAAAAGTAGAACAAGATTATCTTCCAATCAAAGCTCCCATCTGACCGCCAATCAATTGTCTCCATCCTTTTTCATGAAACAGCGTTATGTCAATGTACCCAGGAAGTGTTTGGTGGCATTGATTTGAAGTAAATTGAATATatttgttgttttgaatgtgTATTAAGGAATGATTTAAAGAAAAGAGTACATCTACAGAATAATTAGATGTATAATATTTCTAAATGGTTCAGAGAGAATTTCTATGAAAGACTATGGCCATTGCATCCACCCTCAGAACTTATTTTCACTCTATCCCTGTTTTGTGTTTGGATAGTGCCTCAAATAGCTCATTATTCTCAACATAGTGCCCCATTCCTGCCCTTCTGCCTCTGAACTAGATTAGAACTACCCCAGAATGGACTGCAAAGAGAAGTGTGGAAGCCATGTATGCCACTGTACCCCGATGACCTATATATTAGAACATATCGCTAAAAAGTGAACCGTATTTTGGTCGTCATTCGAGGACATATCCCATGATTCGATCAGTTCACAGTGATGTTCTATGAACATAACCATGATTGTTTGGATTGTGTGCAATTTAGGGTCTCCTGTagggcaacaaaaaaaagaagcTACCTTGGTGAGATTCCTTCTTCTGTCTCCCGGTCCCTGTGTGCAACTGTATGGTAATGAAGGGAAGACAATGGGGATGGGGGGGAAAAAAGGGAATACCAGGCCGACAGAAATAGAAGACTTGCAGGACACTGCTATAATCCATTCATTATTTTAAAAAGAATCAACAGAAGTGACATAGAAAAAACAAGCACAGTATTTTTTATGATTTATATAGAATTCTATGGGATTTTATAAAAAGACATTTGGAGAAAAATATTCAACTCTGAAGTGTGGTTTGCCAAAAAGTGAAGAAAACAactatattatatataaatatatattaataGAAATGAATATCAGATTTATGAGGAAACTAAGAAGCAATATTTATACTGAATGGATATCCTTGGTTGTGGTTTTTTCCCCAGTTTTAAGATGAACTATCGTTATATATTATCACCTGATGATATGATGAACACTGATAGATGAAGTGGACAGAAGACATTTgtccaatcaaaatatattttatatactaTCCTCTGGCCATCACCTGCCTATCTTGAATATTGTAATTTTTTAACAATTCCAAATTGCTTAGTCTGTATAAAATGTGTGTATAAATGACTGAACCGCTTTACATTTATACATATCCTCACAGTCCACTGGATTGAAAATTGTCCCGATGACACTTTTATGCTCAACATATAtagaaatgtacaaaaaaaaaagatgagTTGTGACTGTTGATttcatggagagaaaaaaaaaacatatcactAAGCTAATTTATATGtggaatagtagtagtattaagaTGCTATACAAATCATTACTGTGTGACTATAAGGCTATGCTACATAAGGACTGGCATGGCTCACTATCCCCCCCTACCATCACAACGCAGTCCTTCACTTACCCATCGGCAACTATTTGGATACTTTTCCtatgttctcttcttcttttttctcttctcttcttttatTTTTCATTCTACATAAATACCAAGACGTTTCCGTCtcttttgtgtgtatttgtgttcgTGTTCTCTGTTGTAATTCCTCATCGACTATCGAATTATCAAAAATGAAAAAGAAAGAGAAGTTCCTTGTAACTGCACTCTTCCTTCCCCCAAAATCCTCAATACTTCTTGTATGGCAACCAAAAGTTACTGTAAGAAATAAATATAATATTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2290165 lncRNA downstream 25735 14586587 ~ 14587853 (-) True G2001449
TU2290130 lncRNA downstream 72458 14540907 ~ 14541130 (-) True G2001416
TU2290128 lncRNA downstream 74155 14539137 ~ 14539433 (-) True G2001414
TU2289667 lncRNA downstream 285835 14320379 ~ 14327753 (-) True LOC110506271
TU2289558 lncRNA downstream 324721 14283071 ~ 14288867 (-) True G2000882
TU2290194 lncRNA upstream 12514 14629200 ~ 14629466 (-) True G2001473
TU2290203 lncRNA upstream 31749 14648435 ~ 14648692 (-) True G2001482
TU2290210 lncRNA upstream 46519 14663205 ~ 14674139 (-) True G2001489
TU2290233 lncRNA upstream 83198 14699884 ~ 14700123 (-) True G2001511
TU2290236 lncRNA upstream 86740 14703426 ~ 14703642 (-) True LOC110506082
LOC110506081 mRNA downstream 117036 14377418 ~ 14496552 (-) True LOC110506081
XM_036964285.1 mRNA downstream 244715 14320207 ~ 14368873 (-) False LOC110506271
XM_036964282.1 mRNA downstream 244716 14318304 ~ 14368872 (-) False LOC110506271
XM_036964283.1 mRNA downstream 245628 14318304 ~ 14367960 (-) False LOC110506271
XM_036964122.1 mRNA upstream 86422 14703108 ~ 14788733 (-) False LOC110506082
XR_005039896.1 mRNA upstream 277809 14894495 ~ 14898121 (-) False LOC110506277
XR_005039894.1 mRNA upstream 277809 14894495 ~ 14898577 (-) False LOC110506277
XR_005039895.1 mRNA upstream 277809 14894495 ~ 14898577 (-) False LOC110506277
LOC110506083 mRNA upstream 469502 15086188 ~ 15095528 (-) True LOC110506083
TU2289555 other downstream 334842 14278141 ~ 14278746 (-) True G2000879
TU2288713 other downstream 983513 13629784 ~ 13630075 (-) True G2000052
TU2288641 other downstream 1092068 13520686 ~ 13521520 (-) True G1999980
TU2288512 other downstream 1275437 13337335 ~ 13338151 (-) True G1999856
TU2285507 other downstream 3195253 11418099 ~ 11418335 (-) True G1996949
TU2290186 other upstream 16316 14633002 ~ 14633608 (-) True LOC110506276
TU2292087 other upstream 1098862 15715548 ~ 15718308 (-) True G2003219
TU2292183 other upstream 1338941 15955627 ~ 15959565 (-) False nav2a
TU2292186 other upstream 1338941 15955627 ~ 15959530 (-) True nav2a
TU2292784 other upstream 2104305 16720991 ~ 16723682 (-) True G2003819

Expression Profile