RNA id: XM_036963398.1



Basic Information


Item Value
RNA id XM_036963398.1
length 5518
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110506278
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 14916034 ~ 15085102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAGCACTAAAACACTATCCTGTTAGATTGCCCCGTCAACGGGTTGTGCCAAAGCTGTGTTCACCGCGTCTCGTTTCCTCTCCACAATACGAACACGGACGAAAAGAACACCATGTTATCCAGATTTAAAGACGCCACATTTCAGCAGTGAAaagaggaggtagagacagaggggagtGAACTAACAAAATAGGTTAGAAAGGGACTCAGAGAAGAGAGAATCCCACCGACCATCTGCGtgaggcgagagagaggaggccaaCCGGAGAGCAGCAGCCGACTGGTCGGTGGAATAACCTACGGTTTCCGTTGATTTGAAACGATAATtttgatttgtatttattattctGTGAGACATATTACTAAATTCCAACAAAATGTCATCTTCTGGCAAAGACAACAGCGCACACTATATGAACTATGTGGGACCTTATCGTTTGGAAAAGACCCTCGGCAAAGGACAGACAGgcctggTGAAGCTGGGAATCCACTGTGTCACGTGTCAGAAAGTGGCCATCAAGATCGTCAACAGAGAGAAACTCAGCGAGTCTGTCCTCATGAAGGTGGAGCGAGAGATAGCCATTCTGAAGCTCATAGAGCACCCTCACGTTTTAAAGTTGCACGACGTCTACGAAAACAAGAAATATTTgtaTCTGGTGCTAGAGCACGTGTCAGGCGGAGAGCTGTTTGACTACCTGGTCAAGAAGGGAAGGTTAACGCCCAAGGAGGCCAGGAAGTTCTTCAGACAGATCATCTCAGCTCTGGATTTCTGCCACAGTCACTCCATATGtCACAGAGATCTGAAGCCAGAGAACCTGTTGTTAGATGAGAAGAACAACATCAGGATAGCAGACTTTGGCATGGCGTCTCTGCAGGTCGGGGATAGTCTGCTGGAGACCAGCTGCGGATCTCCTCACTATGCCTGCCCAGAGGTCATAAGGggGGAGAAGTACGACGGGAGGAAAGCAGACGTGTGGAGCTGTGGGGTCATCCTCTTTGCACTTTTAGTGGGTGCCCTGCCATTTGACGATGACAACCTGAGAAACCTGTTGGAGAAGGTGAAGTTGGGTGTTTTCCACATGCCCCACTTCATCCCCCCAGACTGTCAGAACCTTCTTCGGGGCATGATCGAGGTGGATGCCGCTAAGAGACTCACGTTGGAGCAGATCCAGAAGCACAACTGGTACATAGCTGGGAAGAACGAGCCTGAGCCGGAGCAGCCTGTCCCTAGGAAGGTGGCCATCAGAACCCTGAGCACTGAAGAGATAGACCCGGACGTCCTGGAGAGCATGCACTCTCTGGGTTGCTTCAGAGACAAGGGCAAACTCACCAAAGACCTGCTCTCTGACGATGATAACCAGGAGAAGATGATCTACTTCCTGCTGCTGGACCGGAAGGAGAGGTACCCCAGTCAGGAGGACCAGAACCTCCCCCCACGCAGTGAGATAGCTGACCCGCCCAGGAAGCGCGTGGACTCCCCCATGTTGAACCGCCATGGGAAGAGGAGGCCGGAGAGGAAGTCTATGGAGGTGCTGAGTGTCACAGAGGGGGGCTCTCCTGTACCTGTACGACGAGCCATCGACATGGCCACACATGGACAGAGtaagtCTGTTTTCAGTAAAAGCTTGGATATCACAAACGCTAACTTCACCAAAGAAGAAAGGTCACGGTCTATCAGTGGAGCGTCCTCCGGTCTCTCCACTAGTCCTCTCAGCAGTCCCAGGCCGGTCCGGCGCTTCTTTATCCCGCCCCAGTCGCCGGACCTCTGTCAGTCGCCCAACTGTAGCCCCACCCATTCCCCAGAGTCCCGCCTTAACCATAACGGGGTAGGGGGGGGCAATCGGGTGCACCCACACCCGCTCCCCAACTCCTACACGCCAAAGATGGGGTCCCCCCTGATGCACCCCCGCACACAGACCCTTCCCGCCAAGCCCAAAGTGTCTGAGAAGCCCCTTCAGACCACCAGGTCCAACCCTCTTCCCAACTTGGCTGACAGCCCAACCACCCCCAAGTCGGAGCCCACCTCCCCCTCATCACCCCTGGGCAGCCCCCCTTGCGTCCCCAACAGCCCGCGGCCACGCCGCCACCCGCCCCTCACCGTGCCCCCCAAGCTCTCCATCCCCCTGTCCCCAATGCCACCCATGACCCCCCTTCGCCGGCACCGCCTCCACCCTGACCACAACGGTCACAAATCTGTCCCCACCATACAGGTGACTCCGCACCCCTCTCCGCTGGGGAGCCCCCTCCCCACCCCCAAGGGCACTCCGGTGCACACACCCAAGGATAGCCCGGCAGGCACCCCCAGCCCCACGCCGCCCCCCAGCCCCTCCATCGGCGGACTGCCCTGGAGGACACGTCTCAACTCTATCAAGAACAGCTTCCTGGGCTCGCCGCGCTTCCATCGCAGGAAAATGCAAGTCCCCACCCAGGAGGACATGTCCAGCCTCACGCCAGACTCTTCACCAGAGCTTGCCAAGAAGTCATGGTTTGGTAACTTCATCAACCTGGAGAAAGAGGAGCAGATCTTTGTGGTGATCAGAGACAAGCCTCTCAGCTCCATCAAAGCAGACATCGTTCACGCCTTCCTCTCTaTCCCCAGTCTCAGCCACAGTGTGATCAGTCAGACTAGTTTCCGGGCGGAGTATAAGTCCACAGCTGGCCCTACAGTGTTTCAGAAGCCGGTCAAGTTCCAGGTGGACATCACCTACACGGAGAGCACCGCCGCCACCAAAGAGAACGGCATCTATTCGGTCACCTTCACCCTGCTCTCAGGTCCCAGCCGCCGTTTCAAGCGTGTGGTTGAGACCATTCAGGCTCAGCTGATGAGCTCACATGACCAGCCCGGGGTCCAGCAGATCTCTGACGAGAAGAGCAGCCAGGCGTCGCACTACGCCCCTGGCACGCCCGGCACAGCTAGCCCCGCCCCCGCCAAGCATGCCCCCGGCAGCAGGCGAAATGAGTCATGTCCCCTGCCCACTCAGCCCCAGCCCACCCAGCCCACTGACTCTAAATGCCCCCCGCCTCCGGgcaaagacaaacaaacaaagatgGCCGCCGTCAGCCGGACTGGGGAACAACCTTAAGACCGGAGAGAAGTAGCTAGCTCTCTGTTGCATGACTAGATAATAACCACCTGTTATCAGGTCGTTCAAAACCCAATACAAAGCCCACAAGAGTGTGTGAGAGATGAGAAATGAAATGAGAGATGCTGCTGGTTTCTTTGCTTTAGTCAGTAGgcttagtgtgtttgtgtctcgAAAAAAATCTACTTTTGATTATCGCCGAGATGATAAACTTTTGTACTGTGTAATAATGGAATGACTACAATTTTAGTTTAGCAATCGACCATTGATCAGTATTTGACAATATTAAGTACCACGTGTAGccatgtttattttctgttcctCTATCCTCTCGTCCCGTTCCCACGCCGTggggtgtgtgtgtcggtgtgtgtgtgtgtctcctctgcTCTGTGATGATGGCTTGACCTTGTCTCTACCACCAGGGATCATCACTAAAACCTATTAGAGAAACAAGAtggagggcagtgtgtgtgtcccAACCTGGGGCACTTTGTCAACAACGGGAGTAAGTGAGCCAGAGGCGGAGGACAAGAGAAAGACTTCACATACTTCACACTGctgtccccctcctccccatGCACCCCTCCTGCTttccacctgcacacacacacacacacacacacacacacacacacacacacatacactaaacATTAGAGTACTAGAGACTCTCTCATCATCGTGACAGACACCCAGAGACATATTAGCCGAAGAGCTGGAGAAAAGCCTTAAAAAGACAATGATGTTTGTCAAACCTATACtacacacatcctctctcctcctttctctcctccttgtcTATcctcctatacacacacacacacgcacacacacacctgggggaTGTAAGGACTTGCGCACAAAGACGAATGGAAGTAGAACCACTGGCTCCTATGAAAGTTGGAGAGAGGTGGCGCGACTCTTGGAAGTTGGATGGACGTTGGCTGAACGTTGGCTAAACGTTGGCTGGATTGTAATTCTTTTTAATGTAGTCCTTCTTTGTGAACTACAGGATTTTAACACTTTAGACTTCTTCAGACTCTgtgtcattgctgtaaatgaaatGAAATTGAGTTCATTCACTTTGGGTGGGCATTTGGGAGGGAGGGGTACACAAATGAATGATCTATTCTGTTGTACAGACTAACTATGTTCCCATATGTACAACGTTTGTGTAGTTGTGACATTATGTTTAGCTAAGAATTGTGTTAAACTTATCACACTATATTTTGTGTTTTCTACTTGTTGGACGTGTTTCATCGATTAAATGTTGTATTTTATTTTCGGTTCCCTTTTGAGGGATGAATCATTTCAGGGGTTTCATTTTCTTCCATTTTGTTTTGCCCATGTTCCTTTGAAATATCTGCAGGATTCAGACAACAGTGGACATAATTATTGTGTATATTTGTTTCCCTTATTGTCTTTTTTTGTCATGTTTGTTTTAATTTATTCTGggttatttatataaatgatgGAGAAAATGTACTAGATAATTGAaagattgtttttttttgttgtcatgttTAATTTATTGATCATTGAGAATTCACTAAATGTTTTTGTGAACATTCATTTTATTCCAGCTTGGATGAGAAAGCTTGTAATATATACATTTGGCAAATGATTTACGGTAATTTAAGAATGTAGATTAGTCTCTTTGAGAGGAACGAGCCCTCTGTTGATAATAATTGTGCGTTCCTTCTCGTTGTGTGTGTACGACGACAAAGGCAACACTCCAGCCACTTGCCttgtaaatacaaaaaaaattgcAAACAAACTTATTTAAAAAACCAAGGGGATTCCTACTCTTAGCTTTGACCTTGTATTGTCGTTTGCATGTCCAACATTTGTCTTTTCTTTGCATGTTGTTGTTGGAATTGTTCTGTCCCttttccctctttccccccttctttctgtctttctttccttctgtctttctttctttctttccagtCTCTAAATTTGTTtctcttatttttattttctctcaCCACTTCGGTTGTTTGTTCGTCTTTGCGTTCTTTCTCGCaacctcccttctccttccttaTACTACTGTGCACATTTACCGTGCAATGCatcctctgcacacacacacacagttacacacacacacacacacacacacacacagttacacacacacaaacacacacaccgtttCTCTCAAAGAGAGACCTGATACTCTGGTCACGAACTCTGTCTGGGGTGGGAATTGGTATCAGAGAGATAAAAATAAAGCAATACCTATTATTGTTATTCTTTCTATTTTGTACTATTGGGTAGCCAGGCCACACAGGACGATGGACATACAGTAGAACACAACACCAGGAGCGCTGGTATTTAGCAGGAAACCACTGGCAATGTATCCCCTTGTGACATAACTGTGAACAACTTCAGTGCAAAAGGAAATAAATCTGTTGACTTTGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2289908 lncRNA upstream 214562 14701246 ~ 14701472 (+) True G2001210
TU2289907 lncRNA upstream 215407 14700385 ~ 14700627 (+) True G2001209
TU2289890 lncRNA upstream 233463 14682254 ~ 14682571 (+) True G2001192
TU2289887 lncRNA upstream 237416 14678013 ~ 14678618 (+) True G2001189
TU2289866 lncRNA upstream 272309 14643415 ~ 14643725 (+) True G2001168
TU2290680 lncRNA downstream 66315 15151417 ~ 15151648 (+) True G2001922
TU2290697 lncRNA downstream 77814 15162916 ~ 15163151 (+) True G2001939
TU2290700 lncRNA downstream 78782 15163884 ~ 15199799 (+) True G2001940
TU2290794 lncRNA downstream 195329 15280431 ~ 15280668 (+) True G2002033
TU2290795 lncRNA downstream 195696 15280798 ~ 15281030 (+) True G2002034
XM_021585712.2 mRNA upstream 318887 14576930 ~ 14597147 (+) False LOC110506274
XM_021585734.2 mRNA downstream 187400 15272502 ~ 15365797 (+) False LOC110506282
XM_021585736.2 mRNA downstream 238353 15323455 ~ 15365797 (+) False LOC110506282
XM_036964046.1 mRNA downstream 260672 15345774 ~ 15365797 (+) True LOC110506282
XM_036964556.1 mRNA downstream 554782 15639884 ~ 15672938 (+) True LOC110506084
XM_036964407.1 mRNA downstream 631646 15716748 ~ 15731540 (+) True LOC110506283
TU2287233 other upstream 1693353 13222037 ~ 13222681 (+) True G1998628
TU2283219 other upstream 5349880 9565043 ~ 9566154 (+) True G1994851
TU2283109 other upstream 5525101 9390568 ~ 9390933 (+) True G1994757
TU2281693 other upstream 6217911 8697174 ~ 8698123 (+) True G1993783
TU2281675 other upstream 6247767 8666601 ~ 8668267 (+) True G1993771
TU2291409 other downstream 604666 15689768 ~ 15696280 (+) True G2002614
TU2291393 other downstream 710030 15795132 ~ 15800073 (+) False LOC110506284
TU2291396 other downstream 710554 15795656 ~ 15800073 (+) False LOC110506284
TU2291395 other downstream 710599 15795701 ~ 15800073 (+) True LOC110506284
TU2291628 other downstream 986885 16071987 ~ 16074044 (+) True G2002823

Expression Profile


XM_036963398.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.8.
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XM_036963398.1 Expression in each Bioproject

Bar chart with 9 bars.
XM_036963398.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.