RNA id: TCONS_00005112


Basic Information

Item Value
RNA id TCONS_00005112
length 2477
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_002759
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23070741 ~ 23099869 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCGATTTAGCCTGCGTCCGAAATACTGCACACTGTACGCGTGGAGTGAGTGTGCGGTGATCAATATCGACAGTGTCTTTGAAGGGAAGATGAGCGCGGATGTGGAGCGTGTGTTGATCCAGCTCCAGGATGAGGCCGGTGAGGTGCTCGGGTCTCCCTTTGATGTGCCGCTGGACATCAGTCCGGACAAACTGCAGCTGGTCTGCAATGCGCTCTTACAGAAGGAAGAGCCGGTGCCTTTCTTGTTCTTTGTGAAAGATGCAGAGCTGGTGTCGTCTCTGGGCTCCTGCATTCAGACATTGGGTCTGGAGACGGAGCAGGTGCTACCGGTGGTGTATCAGCCACAGGCTGTATTTCGTGTGCGGGCTGTGGCTCGGTGCACCAGCTCTCTGGAGGGCCACACTGAGGCCGTCATATCTGTGGCATTCAGCCCGACTGGAAAATATCTGGCCAGTGGATCTGGAGACACGACAGTGAGGTTTTGGGATCTGAGCACAGAAACACCACATCACACTTCTAGAGGACACACACACTGGGTTTTGTCCATTGCTTGGTCTCCAGATGGAAAGAAATTAGCATCAGGCTGCAAAAACAGTCAGattttcttgTGGGATCCAGTCACAGGCAAACAGATTGGAAAGACTTTGACAGGACATACAAAGTGGATCACCTGGCTGTGCTGGGAACCTCTCcatttAAACCCAGAGTGTCGCTATTTGGCAAGCACCAGTAAAGACTGTACGATTCGCATATGGGACACTGTTTTGGGTCACTATGACAAGATCCTAACaggacacacacactctgtgACGTGTGTGAAATGGGGAGGCGATGGTCTCCTCTACACATCATCTCAGGATAGGACTATTAAAGTCTGGAGAGCCAAAGATGGTGTTCAGTGTCGTACACTGCAAGGTCACGCTCACTGGGTGAACACACTGGCCCTCAGCACTGACTATGTCCTGCGTACAGGAGCATTTGAACCCGCGAACGCAACCATAAACCCTCAGGATCTCACCGGATCATTGGAAGAGATCAAGGAAAAGGCTTTGAAGCGCTACAACAGTGTCAGAGGTGAAGGTCATGAGAGGCTGGTTTCTGGATCAGACGACTTCACCATGTTCTTATGGAACCCAGCAGAGGACAAGAAGCCGGTCGCTCGTCTAACAGGTCACCAAGCATTGGTCAATGAGGTGCTCTTCTCACCCGACACACGACTCATAGCCAGCGCTTCCTTCGACAAGTCCATTAAGATCTGGGATGGAAAAACAGGAAAATATCTGAATTCACTGCGGGGCCACGTCGGGCCTGTGTACCAGGTGGCATGGTCAGCAGACAGTCGCCTGTTGGTCAGCGGCAGCAGTGACAGCACTCTGAAGGTGTGGGACATCAAAACGGGAAAACTGAACGCAGACCTGCCCGGCCATGCTGACGAGGTTTTTGCAGTCGACTGGAGTCCTGATGGACAGCGAGTGGCCAGCGGAGGGAAAGACAAATGTTTAAGGATATGGAGGAAGTAAACCAGAGAACCCAGCGGCCCTTGGCTCTACACACAACAGCCAATCAGGCGTCTAGAAGCGTCGCCCCCACAGGACAGTAAACAGCAGTGTCAGAGTATTAAGCCGTCACCTATTTGCCCAAAGAAAAACGGCTTCGACAGCATCACAAAAGCTGACATATAATGCTTTCTGATGCCTGATAGCAGGAAGATAAAACGGCCGATACTCCAACTCAAATGAGCAGTTGCCCTGTAGAAGTGCCACCGAACTGACCCACTCTAATCTGTGTaatctttctcacacacacattctttgTAATTAACTTAATCCCTAATGCTGTGATACAGGCAGTGTTAACCAGGTCTGTCTGAGGGCTGGGAGATAACCAGCGGCGTCACAGTGGGCCGTGTTACGTCAGCACAGACGTTttctcattaagaaaaaaaaaaaagcagttaaaGGGTTTTTATGGGGTCCGTGTTGTGCGTTTGTGGATTTCTTATCTCGGATTAACCACTGTAGGGTGTCAAACGTGCTTTGTTGTTTGTCAAACAGCACATGTATGACGTAAACAGTCTTTAAGAAAAGACGCTGCAGGCGAATATTAAAAAAGTGGACAAAGTTTGCGTCATACTTCCACAGTTGTGAATTGCAAAATTTGCAGttcaaatatgcaaatgaggcactGCTTCATTAAACGCATGTTTCTAGCACAAAAATATGAATTTTGGATTAAGTTAGGTTTACAATACTGTTGTCGACACATTAGAATCTCTTTCATCAGTCCATAATTCAGAAAATTGTAAGAAAAGCCAGAAAGGAATTTCATTTTCACAATCGGTTGTacaattaaatattgtatataatcAGCCATATTATGAATGAACATATCCCTCTGTAAAAGccctttagaatttaaatatgaataaaactgtaaagTTTGGTGTATGCAATAAAAAATGAAGAGGTTTTgctc

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050522-321 Predicted to be involved in Notch signaling pathway and ribosomal large subunit assembly. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; and pharyngeal arch. Orthologous to human NLE1 (notchless homolog 1).

Ensembl:

ensembl_id ENSDART00000162444

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006042 lncRNA downstream 159078 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006041 lncRNA downstream 463037 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006040 lncRNA downstream 503544 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006039 lncRNA downstream 535828 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00005093 lncRNA downstream 579294 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006043 lncRNA upstream 413253 23513122 ~ 23519215 (-) True XLOC_002761
TCONS_00006044 lncRNA upstream 418192 23518061 ~ 23520243 (-) True XLOC_002762
TCONS_00006045 lncRNA upstream 449107 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006046 lncRNA upstream 680673 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005116 lncRNA upstream 833909 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00005110 mRNA downstream 100029 22960380 ~ 22970723 (-) False XLOC_002758
TCONS_00005109 mRNA downstream 100029 22960380 ~ 22970723 (-) True XLOC_002758
TCONS_00005108 mRNA downstream 152538 22916113 ~ 22918214 (-) True XLOC_002757
TCONS_00005107 mRNA downstream 158497 22907351 ~ 22912255 (-) False XLOC_002756
TCONS_00005106 mRNA downstream 215994 22848556 ~ 22854758 (-) True XLOC_002755
TCONS_00005114 mRNA upstream 116809 23216678 ~ 23379146 (-) False XLOC_002760
TCONS_00005115 mRNA upstream 120632 23220501 ~ 23358357 (-) True XLOC_002760
TCONS_00005118 mRNA upstream 1202564 24302433 ~ 24317274 (-) False XLOC_002765
TCONS_00005120 mRNA upstream 1202564 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005119 mRNA upstream 1202564 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005104 other downstream 239323 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 318404 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 798849 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 1163647 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 1497346 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005129 other upstream 1277548 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 1283397 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 1355747 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 2394304 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 3032600 26132469 ~ 26141081 (-) False XLOC_002799

Expression Profile

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