RNA id: XR_005039786.1


Basic Information

Item Value
RNA id XR_005039786.1
length 1695
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118944445
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 21684386 ~ 21686159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACAACAGGCTTTTTGCCAGACTTCAAACTTACGTCTAGCCTACTACTTCAAGATCACAACTTGAGGAACTTAGAACAATTCAGAGTTGTGAAATCAATGCTGCATTGTGTCATGCATATCAGTAATACAGCCCACACCCTGCAAGTTGACGTCTTTCATAACCAAACCTGATCAAGCGAGACACTTTGTTTACTTTAAGTCTTCTGTGGTCTCATTCATTTCAAAAAGTATTAGATTTCTACTTGAACTTTGTCGTAAGATTTGACGGTGTGCTTACATTCGATGCATAAACTACCTTGCTTACGCAGGTTCTAATAAGCCATTTATCATTTACGCACCTGTGATCTATAAATCTCAAATTGACTTAGAATTGATGGCACCTGAACGTGCCTTACAATCAGCGATTTCCCCTAAAAGAATGCTAGCACAAATTAGTCTTTAGTCAGGAATAgccgctgcagtgaacgaggtggggCAGCAAGACAGAACTGTGGCTGATGTGAAAGAAATGGTCTGACCTTAAACTGCAAGGGGGGAAACATAGCCATACATAACCGCAGCATTAAGGCAACGGGAGGGGGGCCTGGCACGCCGGAGCTCTCCCAAATGGACCAGTGCATCGGGGCAATCAGTGGTTAAAGCGCATACACTGGCACATACCCCGATGGCGacagtaaatgtttttttttttttaaggtgttTCTTCTATTTGAGCTCTTCTGCTTTATTTTTCATATGGTTTAATCCCAATTTTTACATCGGAAACGGTGAAGTCGGCACGCGAATCCCCTAGGACTGCATCTGTAAAGTCTGCTTCCAACTCTCAAACATGTAGATCCCcagaacgcagctcactttccagatcacctgaattctgatcacctgttcacacacctgtatgtcattatcacacactatttagttcagttctttgcaccccatcattgtgcgGTATTATTTGTTTTGTGACACTTCTATTCGGAGCTCTGTTTTCCCCGGTAATCTAAAGCCTCCCGAGTATGATAGTGAAGCAGGCAAAAACTAGCGACGCATTTTGCCTAGTCCCTGCCTGTACTTTCGGATATACTGTTATCAGCCTGTTGCCTGATCTCCCAGACGATGTTACTAGCCTTTTCTCTGCTTGTACTGtttgttgcctttttggaccccctgtgtatggccttctgcctgcccctagacccagctacctgcctcctcctgtggtcctttacaaaaacacctgctgcgccctgcgcttgaaaccagctgtctcccatcgtgttcattacagcATCACTGGATAACGAAATGGAGGAAGCTGTGTTGCAGCCTGTGCGTCGGTTGAGGGTGGCCCCTCCACCAAGGGAGAAAGTGTGTGAGGCTCCCAAATCAGCAGGTGCTAAATGTTTGGCCACAGGTGTGGAGGGTCTGTGTGCCGGTTCCCAATCCGCGAGGCCCAGGTTCCCAAGCATCGCAGATGCCATGAGTGAGGGAATGTTTGGCCTACAGGGGTTGAGGGTCTGTCCACGTCTACAGTTTGTGTGTTGACCACCTCAGTCCTGCAAACCCAGAGTGTTGGACGCATTGGTTGGGCAGATTGTGACTGAAGTTGGAAGAATACACAGGGTTTTACTTCATTTACATAATGCAATTGATGAATGTTTTCCACTacgttaataaaaaaaaaactatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2299314 lncRNA downstream 281 21683577 ~ 21684105 (-) True G2009958
TU2299366 lncRNA downstream 23650 21660514 ~ 21660736 (-) True G2010010
TU2299345 lncRNA downstream 51153 21633008 ~ 21633233 (-) True G2009989
TU2299333 lncRNA downstream 69520 21614659 ~ 21614866 (-) True G2009977
TU2299331 lncRNA downstream 70963 21612999 ~ 21613423 (-) True G2009975
TU2299307 lncRNA upstream 1496 21687655 ~ 21688681 (-) True G2009953
TU2299439 lncRNA upstream 82030 21768189 ~ 21768417 (-) True G2010078
TU2299440 lncRNA upstream 82746 21768905 ~ 21769127 (-) True G2010079
TU2299441 lncRNA upstream 85357 21771516 ~ 21771856 (-) True G2010080
TU2299443 lncRNA upstream 87326 21773485 ~ 21813315 (-) True G2010081
XM_036963347.1 mRNA downstream 87770 21376435 ~ 21596616 (-) True si:ch211-186j3.6
XR_005039803.1 mRNA downstream 480689 21201512 ~ 21203697 (-) True LOC118944467
XM_021585957.2 mRNA downstream 650676 20995259 ~ 21033710 (-) True LOC110506379
XM_021585943.2 mRNA downstream 1191146 20489949 ~ 20493240 (-) True zgc:162297
XM_036963522.1 mRNA downstream 1191642 20489949 ~ 20492744 (-) False zgc:162297
XM_021585968.2 mRNA upstream 5289 21691448 ~ 21759635 (-) False mtss1lb
XM_021585969.2 mRNA upstream 6605 21692764 ~ 21759635 (-) False mtss1lb
XM_021585971.2 mRNA upstream 6605 21692764 ~ 21759635 (-) False mtss1lb
XM_021585972.2 mRNA upstream 6605 21692764 ~ 21759635 (-) False mtss1lb
XM_021585973.2 mRNA upstream 6605 21692764 ~ 21759635 (-) False mtss1lb
TU2299347 other downstream 49794 21634279 ~ 21634592 (-) True G2009991
TU2294697 other downstream 3449850 18234274 ~ 18234536 (-) True G2005584
TU2294564 other downstream 3484797 18194110 ~ 18199589 (-) False G2005456
TU2294243 other downstream 3794305 17887445 ~ 17890081 (-) False G2005166
TU2292784 other downstream 4960704 16720991 ~ 16723682 (-) True G2003819
TU2300664 other upstream 716859 22403018 ~ 22405487 (-) True lto1
TU2301216 other upstream 1559625 23245784 ~ 23247139 (-) True G2011712
TU2302351 other upstream 2520121 24206280 ~ 24222078 (-) True G2012712
TU2302803 other upstream 2810154 24496313 ~ 24496808 (-) True LOC110506455
TU2303152 other upstream 3164111 24850270 ~ 24850636 (-) True G2013483

Expression Profile