RNA id: TCONS_00006044


Basic Information

Item Value
RNA id TCONS_00006044
length 496
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_002762
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23518061 ~ 23520243 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGAGAATAGCAGAACAGAAGTGATCTGAGATGAAGACACTCAGCACTATGACTGCAGTCAGCAGAAGGAAACACAACAGCACCAAACAGACTGGAGCTGCTCTGGAGCATCTAGTCTTCATTGAATCACTTCCTGGAGATGACAGAcatgaatataaatgtttatttattgaacaaaaatGAAAGTGTGTTTGTATTTTTACCTGTTTGATTTCTATGAGAGGACCTGTCCATCTTCAGTCTTGAATTTGTGTTTATGCTGGCATAAATAGGCTGAGACATTTTTATTCTGCTGGTcttataaataatgaattaatgcgGCCTTTGTTTCTACTGTCTAGTCCTTGAGTCTCTAATTTCAGCATTTGAAGCTAATGGGGCAAACATGACAACATATAAGACCATGTGACATCCTGTATCTGTTCACATGCATACAGAAAAGTCTCACTAAAGGTCCCCATTGTGGTTGTGTGGTTAGATGTAGCTAAGTGGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006042 lncRNA downstream 606387 22907397 ~ 22911674 (-) True XLOC_002756
TCONS_00006041 lncRNA downstream 910346 22604273 ~ 22607715 (-) True XLOC_002750
TCONS_00006040 lncRNA downstream 950853 22554349 ~ 22567208 (-) True XLOC_002749
TCONS_00006039 lncRNA downstream 983137 22530785 ~ 22534924 (-) True XLOC_002748
TCONS_00005093 lncRNA downstream 1026603 22481158 ~ 22491458 (-) False XLOC_002745
TCONS_00006045 lncRNA upstream 28733 23548976 ~ 23549882 (-) True XLOC_002763
TCONS_00006046 lncRNA upstream 260299 23780542 ~ 24049205 (-) False XLOC_002764
TCONS_00005116 lncRNA upstream 413535 23933778 ~ 24049123 (-) False XLOC_002764
TCONS_00005117 lncRNA upstream 525964 24046207 ~ 24049195 (-) True XLOC_002764
TCONS_00005132 lncRNA upstream 919377 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00005114 mRNA downstream 138915 23216678 ~ 23379146 (-) False XLOC_002760
TCONS_00005115 mRNA downstream 159704 23220501 ~ 23358357 (-) True XLOC_002760
TCONS_00005112 mRNA downstream 418192 23070752 ~ 23099869 (-) False XLOC_002759
TCONS_00005113 mRNA downstream 418210 23071274 ~ 23099851 (-) True XLOC_002759
TCONS_00005111 mRNA downstream 418252 23070741 ~ 23099809 (-) False XLOC_002759
TCONS_00005118 mRNA upstream 782190 24302433 ~ 24317274 (-) False XLOC_002765
TCONS_00005120 mRNA upstream 782190 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005119 mRNA upstream 782190 24302433 ~ 24318538 (-) False XLOC_002765
TCONS_00005121 mRNA upstream 784291 24304534 ~ 24319526 (-) True XLOC_002765
TCONS_00005122 mRNA upstream 803508 24323751 ~ 24371312 (-) False XLOC_002766
TCONS_00005104 other downstream 686632 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 765713 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005092 other downstream 1246158 22271789 ~ 22271903 (-) True XLOC_002744
TCONS_00005077 other downstream 1610956 21863066 ~ 21907105 (-) False XLOC_002733
TCONS_00005073 other downstream 1944655 21570361 ~ 21573406 (-) False XLOC_002730
TCONS_00005129 other upstream 857174 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005130 other upstream 863023 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005133 other upstream 935373 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005164 other upstream 1973930 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 2612226 26132469 ~ 26141081 (-) False XLOC_002799

Expression Profile

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