RNA id: XM_021586464.2



Basic Information


Item Value
RNA id XM_021586464.2
length 2415
RNA type mRNA
GC content 0.47
exon number 13
gene id nucb2a
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 33159342 ~ 33168228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTTATCCAATGGCAACTACCCAATTTAGCTGGCATGCCATGTTGTCAATGTAGGATTTCATTCACTTGCTATCTGACACTGTAAACAAACGCCTGCTGGCATCAAGGAGGGAACGAGGATAAATGATCAGCTCCGGAGGagactagttagctagctaaattagcttGACAGGGTTTCAACTAGATAGCACAGCCACAACGTACAAATTGGCTATAATGTAAAGATTAATGAAAACAGAATTGGTGTTAATGTAAGGTTAGGCGTACGGTTAGCCCTGTGGTTaaagttaggtttaaaatctaattttaagaagagacattttagaaataggcggggtttacgACTTTGTGACTGTAGTAACGACCGTTTTGACGGATTCCGATCAAAAAATGTCTTGGAGCCAGGTATTCCACACCAGCTGCCTTGTGCTTCTGGTACATCTGCTCTGCCTGGAGGCAGTGCCCATCAGTCTGGACAAGACCAAGGTGAACCAGCCGGAGGACAAAGCCTCAGAGCCACCACCAAGTGTGGACACTGGACTCCACTATGACCGTTATCTCAGGGAAGTCATTGATTTTCTGGAAAAAGACCAGCATTTCAGAGAGAAGCTCCATAACACTGATATGGAGGACATCAAGATGGGGAAGCTGGCCAAAGAGCTGGACTTTGTCAGCCACCATGTAAGGACACAACTGGACGAGCTAAAAAGGCAGGAGGTTAGCCGGCTACGGACACTGATCAAAGCCAAGCAAGACATTGAAGGAGGGAACGATATGGCAGTAGACCACCAAGCTCTGCTGAAACAGTTTGAGTACCTGAACCACATGAATCCTCACACCTTTGAAGTGGAGGATCTGGACAGACTCATCAAATCAGCCACAAACGATCTGGAGAACTATGACAAGGAGCGCCATGAGGAGTTCAAGAAGTACGAGATGACGAAAGACCATGAGCGAAGGGAACACCTCAAGACTCTAGACGATGaagggaggaagaaggaggaagaACATTACGAGGAGATGAAGAAGAAACATGCAGACCATCCCAAAGTCAACCATCCAGGCAGCCAGAATCAGTTCAAAGAGGTGTGGGAGGAAGCAGATGGTCTTGACCCTGAAGATTTTGACCCCAAGACCTTTTTCAAGCTGCATGATTCCAATGGAGATGGCTTCTTCGATGAGCAGGAATTGGAGGCATTGTTTACGAAGGAGCTGGAGAAGATCTATGATCCTACCAATGAAGAGGACGATAtggtggagatggaggaggagcgCCTGCGTATGAGAGAGCACGTCATGAACGAGGTGGACACCAACAAAGACAGACTGGTCTCCTTAGAAGAGTTCCTGATTGCCACAAAGAAGAAGGAATTCCTGGAACCAGATAGTTGGGAGACCTTAGAGCAGAACCAGGCCTACACAGACGAGGAGATGAGGGAGTTTGAGGAGCACCTGGCCCAGCAGGAAGAGGACCTCAACCAGAAAGCATCAGACCTCCAGAAACAGAGGGATGAGTTGGAGAGGCAACAGGAACAGCTCAACTCACAGAAAGTAGAGCTTCAGCAGGCAGTAGAACACATGGAACggttgaaaacccagaaagttgAGCCCCCTCCAGAGGTTCATGAAGGGAATGCTATCCCAGAGCCACAAGGAGAGTACCATCCTTTGCCCCTGGGCCACCAAGATATGTCCCAAAACCACCCGGGTATGAAGCAAGACAACCACCTCCAGAACCAAATACCCCACAACACCCAGGATTTGTCCCAACCACGACTCCAAGATCTGCCCCCAGGCCATCAGGCAGTGCCATAGGGCCAACATTACTTACCATAAGGCCCCCATCAGAACCAGCCCACTCAACCCCAGCTGCCAGAtaaaactctatagacaacaCCTCTGGCTCCATGGCCTCCCACCCACAGACCTTTACAGTACTTATATACCTCCAGTCCAGTGTGCAGAGGTCCCTCCATATGGGCATGTGTACCCCGTTATCCTGAAAGAGTTAACTGAAAACCAGCTGGAGAACACAGGAGGCGTTTACAGTATCTCTGCCCACTTGTGGATTTCAATTTGAGCCTCCAAGGCCTAGAAATGTTTTATACGTTTGCAGTCAGGGAATTTGTGTTAGAGTGCATATATGGTATGTGATGTATGGATTGGTCATAATTGATCATTACTTAAAATGCAGAGCTTTGGTGGAATGGTTTTGGTAGTGTCAATGTCTATATATTTTGGAACATTGTTTTTAATTAGTGATGTCAGGTCACTTCACCTGAATAATGATAATGTTGTGAAATGTACGGATTCCTGAAAAGGCTCCATTTCAAAAGGCACTGAAAATGGCATTGGGAGCATTATGAACAGTAAAGACAACTGTCTCATGgaacagaatataatatacaAATCTT

Function


GO: NA

KEGG:

id description
K20371 NUCB; nucleobindin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2312876 lncRNA downstream 16549 33142557 ~ 33142793 (-) True G2022150
TU2312867 lncRNA downstream 24497 33134589 ~ 33134845 (-) True G2022141
TU2312866 lncRNA downstream 50698 33108440 ~ 33108644 (-) True G2022140
TU2312865 lncRNA downstream 79916 33079132 ~ 33079426 (-) True G2022139
TU2312859 lncRNA downstream 102382 33056428 ~ 33056960 (-) True G2022133
TU2313514 lncRNA upstream 1226 33169454 ~ 33169745 (-) True G2022722
TU2313518 lncRNA upstream 5136 33173364 ~ 33173670 (-) True G2022726
TU2313523 lncRNA upstream 11505 33179733 ~ 33181935 (-) False G2022728
TU2313524 lncRNA upstream 11505 33179733 ~ 33183283 (-) False G2022728
TU2313521 lncRNA upstream 11904 33180132 ~ 33181935 (-) True G2022728
XM_021586461.2 mRNA downstream 233075 32900561 ~ 32926267 (-) True LOC110506670
XM_036963163.1 mRNA downstream 328227 32829842 ~ 32831115 (-) False LOC110506665
XM_021586456.2 mRNA downstream 328300 32829842 ~ 32831042 (-) False LOC110506665
XM_021586455.2 mRNA downstream 333593 32823041 ~ 32825749 (-) True LOC110506664
XM_036963295.1 mRNA downstream 573860 32532198 ~ 32585482 (-) False LOC110506653
XM_036963622.1 mRNA upstream 218624 33386852 ~ 33388945 (-) True LOC118944422
NM_001124587.1 mRNA upstream 633106 33801334 ~ 33815643 (-) False LOC100136595
XM_036963254.1 mRNA upstream 677782 33846010 ~ 33927988 (-) False LOC110506676
XM_036963255.1 mRNA upstream 677782 33846010 ~ 33927989 (-) True LOC110506676
XR_002471018.2 mRNA upstream 946281 34114509 ~ 34118233 (-) False LOC110506684
TU2312761 other downstream 280571 32875255 ~ 32878771 (-) True G2022042
TU2312670 other downstream 324861 32831627 ~ 32834481 (-) True G2021975
TU2312677 other downstream 340362 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 442429 32716126 ~ 32716913 (-) True G2021956
TU2312501 other downstream 573983 32528233 ~ 32585359 (-) True LOC110506653
TU2313928 other upstream 631988 33800216 ~ 33804324 (-) True LOC100136595
TU2314697 other upstream 1332625 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 1708194 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 2227846 35396074 ~ 35399967 (-) True G2024949
TU2316121 other upstream 2327559 35495787 ~ 35497803 (-) True G2025061

Expression Profile


XM_021586464.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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XM_021586464.2 Expression in each Bioproject

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XM_021586464.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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