RNA id: XM_036963914.1


Basic Information

Item Value
RNA id XM_036963914.1
length 2156
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110506147
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42067732 ~ 42070472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCACGAAATCGTAACATTTGTAAACAAGGCTGTTCTGGCAGCAGAACTTCGAAATCGGAAACCCGCAAACGCATTCACAGGGGAAATATTTGGCATAAACATACGACAGCTTAGCTAACCATCTAATGCTAGTTAGTTAACGTCGTTAACCAGAATTGAACACCTAGCTACGGACCTTCAAAATGCAATGTTGTGTTTGGGGGTGCAAGGCCCAATATCGGAAAGGAGGAGGGTTAGGGTTTTTCCGATTCCCTACTGGAGAGAACGAAATTGCTCAAAATCAAAGGAAAACTTGGATAAAAATGGTGAAGATTGAAAACCCCGAACCAGATCTGCCTTCCCGTTTGGGTGGTAAATTGGTACTCCAAATGGGAAACGACTGGcaccctactacctcctctcGCATTTGTGGGAGGCACTTTGTTTTAAAAAAACCAAACCTACATCCGGACCACCCTGACTTTGCCCCATCCCTCTTCCTTCGCCCAGAGGACGATGCCTTGAGTCCGAACACAGCTCAGACAGAAGGGAAAAGAAACCTGCAGAGCTATGACAGGGcagtgaagaagaagaagtgccTTGACCTTAGTGAGGTTGGAGGTGCTGACCTGAGGGACAGTTATGCTGACACCACAGAAGAAACTGAAGAGCAGGACCTGGGCACCTGTGTATCGTGTGAGGTCCTGAGGAAGTCCTTAAATTATTTGCAGTCCAGGCATGATGCTCTGCAAGTCGAAGCTGTCAATCTCAGGGCGGAGAGAGACTTTTACAAATATAACACATCTCAATCCTCTCTCTTTGTTGACACCTTTACAGACAGAGACAATCAAATGCATACAGTGAGAGAAGTGCCAAGCATGGCTAAACCAAATGGTATGAACCAACAATGTACTGGGATGGTTGAGGAGCCCTGTCTTATGGAGGTTGAGGGGTTATGTTCTGTGAAGGTTGAGGAGCTTTGTCCTGTGAAGGTTGAGGGGGACTATGATCAAGTGTTGATTAAGGAAGAGGAACAACAGGTCCAAATAGAACTTTGTAGCCCCTTGGCTAGTCAGGACAAAGTGACCCATGTCTCCCAGGATAAACCTACCCAGCATAGCAATATTATGAAGGCCACCAGGCGACCATGTCTGTTAGCTCAGCATAAACCCATCCAGATAGTCAACACAATGTCACTCACCGGGGTGGTAGCCCCCAGGCCCCCAAGTCAGGTAACCAAGGATAAACCTATCCAGCTTGCCAAAACCAACAACCAATGTTCTGTGAAGGTTGAGGAGTCATGTTTTGTGAAGGTTGAGGTGGACTATGATCAAATGTCGATTAAGGAAGCAGAGCAACAGGTCCAAATAGAAATCTGTAGCCCCTTGGCTAGTCAAGACAAAGTGACCAATGTCTCTCGCAGGTTGCCAATTCATGTCCCCAAGGATAAAACTATCCAGCTTGCCAAAGCCGTAGTAGAAAGCCACCTAATGACGAACCATCTGCCTGGCAGCCAAACCACTGCTGAGCCTTTACAGAAGACTCCTCTGTCAGCTCAAACGACACCTGTTGCAGGCAAACAAATTCAGAGAAgcataacacacacagagagggatgaGTTGCTTTGGCTGGGCTACATGAAGTGGAATGTGCGTCTTCCTGCAAGCACAATTAGAACCGCACACAAGTTTCAGACGCCTAGGGCAACAGTGCAATACCTTCTACACGCGGTCTTCTCCCAATGTGAACTCGCCACCAGCAATCTCAAGGGCATTCCTGCACTGGGCCTTAACAAACTGGACCCGGACAAACTTTCTGCCATAAGACAGTTTGTCACCACCAAGTTTCGTCGTTTAGACATGCGTCAATGTGGTAAAGACTGGGTCAAGTGCCGGCGCCAGATAACCAGCATGCTCCGGAACATTCGGAAGGAGGACAGGAAGTCGAGGGGGCTCTCAGGAAACCTTTGTATGATAGAGAAGGTGTTAACGGATCAGAGTTTACCCCGTCAGCCATCGCCTCCCTCATTCCCCTCGATCTCCCAACAGCACACAGCTGCCTTCTACAACccaacagaagaagaagagatcCTCTGTCTGGAGAGTTAGGTTACACAATATCTGCAATGATGTTTGCATTTTCTTGAAATAAACAGTTTGTTGGgagtaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323091 lncRNA downstream 6172 42060878 ~ 42061560 (-) True G2031017
TU2323078 lncRNA downstream 35373 42031782 ~ 42032359 (-) True G2031004
TU2323055 lncRNA downstream 88789 41978494 ~ 41978943 (-) True G2030984
TU2323051 lncRNA downstream 90096 41974255 ~ 41977636 (-) True G2030982
TU2323050 lncRNA downstream 90415 41974255 ~ 41977317 (-) False G2030982
TU2323107 lncRNA upstream 24161 42094633 ~ 42094991 (-) True G2031029
TU2323075 lncRNA upstream 26676 42097148 ~ 42099490 (-) True G2031002
TU2323164 lncRNA upstream 149033 42219505 ~ 42220377 (-) True G2031083
TU2323303 lncRNA upstream 216184 42286656 ~ 42288310 (-) True G2031201
TU2323346 lncRNA upstream 231581 42302053 ~ 42383608 (-) False G2031224
XM_036963904.1 mRNA downstream 11164 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA downstream 11164 41986285 ~ 42056568 (-) True LOC110506148
XM_036963906.1 mRNA downstream 40234 41986285 ~ 42027498 (-) False LOC110506148
XR_005039797.1 mRNA downstream 81637 41984638 ~ 41986095 (-) True LOC110506839
XR_005039889.1 mRNA downstream 151201 41906824 ~ 41916531 (-) True LOC118936287
XM_036963913.1 mRNA upstream 47949 42118421 ~ 42138004 (-) True LOC118944459
XM_021586700.2 mRNA upstream 77292 42147764 ~ 42148866 (-) False LOC110506841
XM_036964584.1 mRNA upstream 144429 42214901 ~ 42217502 (-) False LOC118944568
XM_036963237.1 mRNA upstream 392109 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 392109 42462581 ~ 42509613 (-) True LOC110506162
TU2322609 other downstream 499819 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 604542 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 855880 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1160539 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 1168711 40898470 ~ 40899021 (-) True G2030162
TU2323116 other upstream 76888 42147360 ~ 42148871 (-) True LOC110506841
TU2323163 other upstream 145967 42216439 ~ 42217465 (-) True LOC118944568
TU2323351 other upstream 272810 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 272810 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 272810 42343282 ~ 42346725 (-) True G2031225

Expression Profile