RNA id: XM_036964584.1



Basic Information


Item Value
RNA id XM_036964584.1
length 844
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC118944568
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42214901 ~ 42217502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCCGGCAGTCCGTTGcacatttactcactctgaactTCCGAACCTCCACTTTGATCCCCTGCGCTCTCTTATTGCCGCCACGACTGCACAGCATTTACCACGCACCGCATCAGAACCATGGATAGCTCAGGAGTGCTGCTCCGACTGCTGTGTATCGGTCTGATGTCCGTTATGTGCCGAGGACAGGCGTCACATGAAGTTTCCGCAGAGGACTTTGGCGCGCAGAACTCTGCCGCGGCCGCAGAGAAAGAACTTGTGGATGCGATGGAGGCTCTTCTAGTGAAGATGCAGAGCCGTCTGCCTTCTaatgagaagagagggatgatcCCTCCTtGTGGTATGGGCGACCGGTGTGCCTTGAGGCATGGACCCCGCATTGGGAAGCTCTGTGACTGTGGCAGAGTCAGCAGCTGCAACTCCTTCCTCCTCAAATGTCTCTAAACTCCCTCAAGGAGAAACACTTCACTAGAACCACCACATCCAACGCTCCAGCCAAGACAGAGGAATATCATCATCAACTTGTATCATCACCTGTatcccaaatgataccctattcccACTACTTTAGATCATGTCCccaagggctctggtcaatattATTGCAATATTTTGGGAATATGGGGAGTTTGCGACAAACCACTGTGTCCACAACCGCAAGGGATATGCAGCATCCACATGCTGTAGGCCAACATTATGGCACTTGAGTGTTGTCTTGTTTTGTCCTTGTGCTTTGATAAAGTCCTTTCCATTGAAAGAGGAGCATGGAGGTGTTCTGTAACCCAGAAAGCATTTACAGCATGTGCGCTCTAGACTGTCAAACACATAAACATGTTGGTCATCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2323075 lncRNA downstream 115411 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 119910 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 153341 42060878 ~ 42061560 (-) True G2031017
TU2323078 lncRNA downstream 182542 42031782 ~ 42032359 (-) True G2031004
TU2323055 lncRNA downstream 235958 41978494 ~ 41978943 (-) True G2030984
TU2323164 lncRNA upstream 2003 42219505 ~ 42220377 (-) True G2031083
TU2323303 lncRNA upstream 69154 42286656 ~ 42288310 (-) True G2031201
TU2323346 lncRNA upstream 84551 42302053 ~ 42383608 (-) False G2031224
TU2323393 lncRNA upstream 153200 42370702 ~ 42372438 (-) True G2031260
TU2323336 lncRNA upstream 159619 42377121 ~ 42383608 (-) False G2031224
XM_021586700.2 mRNA downstream 66035 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 76897 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 144429 42067732 ~ 42070472 (-) True LOC110506147
XM_036963904.1 mRNA downstream 158333 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA downstream 158333 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 245079 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 245079 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 294778 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 307079 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 307081 42524583 ~ 42526465 (-) True LOC110526670
TU2323116 other downstream 66030 42147360 ~ 42148871 (-) True LOC110506841
TU2322609 other downstream 646988 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 751711 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 1003049 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1307708 40906623 ~ 40907193 (-) True G2030156
TU2323351 other upstream 125780 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 125780 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 125780 42343282 ~ 42346725 (-) True G2031225
TU2323389 other upstream 150752 42368254 ~ 42369909 (-) True G2031259
TU2323433 other upstream 241755 42459257 ~ 42461315 (-) True G2031286

Expression Profile