RNA id: XM_036963238.1


Basic Information

Item Value
RNA id XM_036963238.1
length 4307
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC110506162
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42462581 ~ 42509613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGGATTAAAGGGTACTCCGCACACCTAGGCCTATTTCTGTCTTGCATAAGAGGTTTACAGTACTTTAATACTCGGAGTCCCAACAACCTGGCCAACCTCCTACGTTTCTCTCTTGATCCCCCCACAATAGTTTTCCCGCCTcatgtacactacactacacttacCAATCAATCCAATTTATTTTAATCGGCTTAATCCTAAAAAGTAGAGAAACCTTCCTTGATCACATCTGAAGCCAAAATCTCTTTGACTGGCTCTCCCTCTCAGGGTGTTTGCCTTGTACATCATCCATGCCTGTCTGTTGGGGGAGATGTGTGGGATGATCGATGGGGCCCAGAGAAATGGTGGTGCTGGGGCTTATTAATGAAAAACAGGAGGGTGATATGCATATACTAAACTTGAGTGTTTCCGGGCTTGTTAACTCTGTACTGCTGTCCCAGTACCCCTTTCATCCTGATTTATGATTGACCGTTGAGAGCCAGTGGACCTGGAGCTTCGTCGCCCCCCTCAGTGCCTGCTGCACCAGTCTGGGAAGTAATGTTGTGTCGCTGTCTCTGTACTCAGatATGTTGCTGCTGTGGCCCGGCCCCGTGTTCACTGTGCTGCTCCTTCTGCCCCCCGGTGAAGTCATCGTCCAGCACGAGGATCATGTACACACTCTTCCACATCATGGCCTGCGCCGTCTCCTGTCTCATGCTCTCACGCACTGTCTCCGAGGCTGTCCGGGACAATgTGCCTTTCTTCAACATGGTGTGTGACCAGGCCCATGGCGGAGGGCACTGTGAGATGCTGGTTGGCTACTCAGCGGTCTACAGGGTCTGCTTCGGCACTGCCTGCTTCTACCTGATGATGGCGTTGTTCCTCATCGATGTCAAGTCCAGCCAGGACTTCAGAGCGCTCATCCACAATGGGTTCTGGTTTCTGAAGTTCATCACCCTGCTTGGGATGTGTACTGCTGCCTTCTTCATCCCTACTGAGTCCTTCCTGCATGcctggcACTACGTAGGCGTGGTGGGAGGATTTGCCTTCATCCTCATCCAACTCAGTCTCATCACAGCATTTGCCCACACCTGGAACAAGAACTGGTTAACAGGAGCGGCAGAGGACAAGCGCTGGTACCTGGCGGTGATGTGTGCCACCCTGTTCTTCTACAGCATCGCCACCATGGCCTTCACCTTCATGTATAAGTACTACACCCACCCCACCGCCTGCCAGTCCAACAAGGTCCTGCTGTGGACCAACCTGACCCTGTGTGGCATCATGTCCTTCATCGCCGTCACGCCCTGTGTACAGCAGAAACAGCCTCGTTCAGGGCTCCTGCAGGCTTCCATCATCAGCTGCTACGTCATGTATCTCACCTTGTCTGCCCTGTCCAGCCGGCCCCCAGAGAAAATGGTGTACCAGGGGGTGAATATGACAGTATGTTACCCCAGTGTGGGTCAGGATGGCATCCAGAAGGAGACCAACGCGGTGGCCATTATAGGAGCTGCCATCATGTACTGCTGTGTGCTCTTCGCCTGTAACGAAGCATCCTACCTGGCAGAGGTTTTTGGCCCTTTCTGGATGATCAAAGTTTACCGCTATGAGTTCCAGAAAGCCACATGCTGCTTCTGCTGCCCTGACAAAGAGGAAGAGGTGGAGTTTGTGATTGACGAAGATATCAAGGGCTGCCAGAAGGTGATTCACAACGAGAACCAGAGAGTGGCTTACAGCTACTTCTTCTTCCACTTCGTCTTCTTCCTGGCCTCGCTCTACGTCATGATGACCCTAACCAACTGGTTCAGCTATGAGTCAGCGGTGCTGGAGACCACGTTCACCCACGGCAGCTGGTCCACGTTCTGGGTGAAAATGTCATCGTGTTGGGCATGCGTGGTACTCTACCTCTGGCTGCTGCTGAGCCCACTCTGCCACTGTGGCTCCGACTCGCACCGCCCGCGACGTTCCCGCATTAAACGCCGCTCAGCCAACTCCTCCAGTCACGTCAGTGTCAGCGTCTGACCTGTGACCTTTGAGTCAGAGCCTGGCTTCTGGGGGTGGAGAACAGGATAGGACAGCTAGCAGGAGAAGATGGACAATTTCCCCCGCTGTGGTACCCGGAAGGTGGAGGATGGTTTTGATGATATCCCCTTGAACCCTCCACCAGTCTCCCATATTGAAGTCGGATGTCAGGGGACAGAGATGAGAGGTCATGGGTCATTGAGACTCACTCCAGCTAGAAggacagactaacagactaacCAGAGGATTAATGAATGAATCTGATGTTCCTCACACAGACCACCTGAACCTCCAAACATAGACCAAGAGACTAACCAGACTGTGCTCTGAAACAGGAACAAAGACCCTATACAGAATCACTACATCCTGCCATCCAAACTGATTTCACAACATTTCACTATTGTTTCACTCGGTAAGTGAAgtattcagtctggtttaaccaggctagaaCCACTATGGACTACTATGCTGAGACTGCCAAAAGGGAACAAAAAGGATGAGCTCTTGACTCGCTTACGACGGGAGCTGTAGGGAAATGTTGGCTGACTTTTTACTCTTTTTGAATATTTTATTTCTTATAGTAAGGACTGTGTACCATTTTTAAAATTACAACCGGGGGTAGATTTGTCAGTAGGATCATTATTTTTCTCAGTGGTTTCAACAACTGAAGATTTACCTGAACATTTCACACCATTTCGAAGGTTTACATGAACATTTTGCACATTAGTGTGTTCATACTGTTTGAATATGTTCGCTCTGGTGTTGAGCTAATGTGaatgataaaataaaatattacttAACACTTTCGCCAACAGGTATAATGCTATATTACTTGTTATAAGCATGTATGAGCCTTTATAATGCCTTACAATAAGGCCTATACTGTTTTATGTTGGCCGAGCAAATTTCCAACGGACCTAATGGCTTATATAGTCAGGATCATTATGAGTTGATTACAACACATTATAAGGGGTTCATATATGTTCATGACAAGTCTTTCAATGCATTATATCTGTCGGCTTTAAGtaaaatgttaccaaatactCTTATACCAATTATTTATTTCGCAATGCCTTTTTAACATCGTTGGAGTGGTGTATCCATTTCTATATTGGTTTTTGAAAGGAAAATGTGGTAAAATTGTTTTGGCAGTTAAGTTTTACAAGAAACCCCAGCTACAAGACCCTGACATGTCTGGTTTAAAGGGGCTCTCTATGATCTGGGGTGTATTTGCTAGGAACAGAATGGAAACAAATGTGCCGAAACGGGAAGAAACGCTTGTTTGGTATTCACATTTGAAAATGCTTCGCTACGGAGTGCACTAATGAATGCACCCGTGTTTTAGAAGAACCATTGAGGATCGAGAGCCAAGTTTCTGTGAAGACTTCTACACAGTTAATGACCAATAATTTGACTCTGTAAAACCTTTGTGTACGATACTGCATTTAGGTCCTTTTTTAGCTAATTTCATGTTACTATGATAGCAGGTGTGTGAAGTTAtttttgtaaatacattttataatgaaACACAGCTTCTGTTGATTAAAGTGTGATATTTTTGTAAGCGAACAACCCCTAAAATCACATTGGATTCCAATTAGTTTCCCAAATTCCATTTTCTCCCTTTTGTATTtttcaggttttcgctctcagAAATCACgcctttttaaattattttttttacacataaCAACAAAAATGGATGAtccaagtccacaacaatgcttgaACCACATCAGGgcaccacttttgaggtctgtgAAAAATAGAAAACAATTTAGATTTAAATTACCCTTTAATGCAACTGTGCACCAGCAAGAGACTGTTTGGTTAGTGATGTTTATGTGGTGCTCATATGATTGCAGAATTTgctaaacaaatggccactggattgatgcaaataatcatatGATTCGGCcaggtaggcataggctactttgtagttaacatttaattgagaaggttttgggaAAAGCCTTTCTATCTCTACCAGAAGACGTTTATCATTACCATCATTGCTaatggctacacaaagtgtagacatatgcacgcacacacacacacactccttttccAACTCAGAAAGTTGCTGGATAATACGAATCACATTCTGACTGAACAGAATAGGCTACACACGCTCATTCAAATTCAAATATCTAAACTACAGTTGTTGCGTGTGAAAAGGTTTCACGTACAAAAAATAAAAAGTCAATGTGCATCAGCGTTTCTTCTTTCCCTACTCTCGCTTCGCTTGTTAGATATTAAGCACATTGATAGTTCGCTAGCAAACCTCTCCTGTTGATGTA

Function

GO: NA

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323434 lncRNA downstream 218 42461976 ~ 42462363 (-) True G2031287
TU2323456 lncRNA downstream 3790 42458567 ~ 42458791 (-) True G2031307
TU2323455 lncRNA downstream 4070 42458159 ~ 42458511 (-) True G2031306
TU2323356 lncRNA downstream 4661 42456845 ~ 42457920 (-) True G2031227
TU2323428 lncRNA downstream 43726 42417395 ~ 42418855 (-) True G2031281
TU2323473 lncRNA upstream 14257 42523870 ~ 42524088 (-) True G2031323
TU2323492 lncRNA upstream 47739 42557352 ~ 42557581 (-) True G2031342
TU2323515 lncRNA upstream 77988 42587601 ~ 42587854 (-) True G2031357
TU2323482 lncRNA upstream 78725 42588338 ~ 42588647 (-) True G2031332
TU2323751 lncRNA upstream 81660 42591273 ~ 42591501 (-) True G2031518
XM_036964584.1 mRNA downstream 245079 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 313715 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 324577 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 392109 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 406013 41986285 ~ 42056568 (-) True LOC110506148
XM_036963722.1 mRNA upstream 2667 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 14968 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 14970 42524583 ~ 42526465 (-) True LOC110526670
XM_021596121.2 mRNA upstream 38736 42548349 ~ 42551080 (-) True LOC110518657
XM_036963862.1 mRNA upstream 41599 42551212 ~ 42554425 (-) False LOC110526673
TU2323433 other downstream 1266 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 92672 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 115856 42343282 ~ 42346725 (-) False G2031225
TU2323493 other upstream 48184 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 106631 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 675023 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 682085 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 1059547 43569160 ~ 43570054 (-) True G2032150

Expression Profile