RNA id: TU2323768


Basic Information

Item Value
RNA id TU2323768
length 1692
lncRNA type read_through
GC content 0.41
exon number 2
gene id LOC110513924
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42616181 ~ 42958849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttccaaacatctctgccaataacagctcgttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTACAGTGGTTGTTTAAGTTACAGGTCAAAATAAAACAACTTAAAAGGACAGTTATTCCTAAGTAAATAGGAGTTTATGTTCTGCCTCTGCAGAGGAGCAGTAATGAGGAACGTGGCTGTtatatctctctccttcatccctcTACCACCACTCCCTCTTCTGcctcctctttctctacctcaaccacctcctctttcttcaacacctcctctttctctacctccgcCAACACCTCCACTTCCCCCTCAGGCTCGGGGTACAGGCTGGACACGTTCCCGTCATTCCAGGTCACCACAATGTCCCCCGGTTTGAGCCCCTCTACCTCCCCGTTGTCCTGGAGGGGCTTGGCCTGGCTCACTGGGATCTCAGATGGGCTCATACTGACCTGGACATAGGCACTATTGACGGAGTTAGTTCTTTGACCTCCAACTTCCGTGACGATGACCTGTAGTTCTTCCGCCTCCGGCTTCATGGCCAGAGCCGCCGCCTTGTACTTGGCTATCTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323752 lncRNA downstream 24379 42591575 ~ 42591865 (-) True G2031519
TU2323751 lncRNA downstream 24743 42591273 ~ 42591501 (-) True G2031518
TU2323482 lncRNA downstream 27597 42588338 ~ 42588647 (-) True G2031332
TU2323515 lncRNA downstream 28390 42587601 ~ 42587854 (-) True G2031357
TU2323492 lncRNA downstream 58663 42557352 ~ 42557581 (-) True G2031342
TU2323900 lncRNA upstream 3347 42962196 ~ 42963888 (-) True G2031633
TU2323934 lncRNA upstream 15260 42974109 ~ 42974393 (-) True G2031663
TU2323942 lncRNA upstream 23932 42982781 ~ 42982999 (-) True G2031671
TU2323944 lncRNA upstream 25267 42984116 ~ 42984383 (-) True G2031673
TU2323948 lncRNA upstream 28620 42987469 ~ 42987814 (-) True G2031677
XM_036963166.1 mRNA downstream 7378 42603751 ~ 42608866 (-) True LOC118944394
XR_005039698.1 mRNA downstream 50554 42564249 ~ 42565690 (-) True LOC118944434
XR_005039697.1 mRNA downstream 50557 42564249 ~ 42565687 (-) False LOC118944434
XM_021607813.2 mRNA downstream 61735 42551212 ~ 42554509 (-) True LOC110526673
XM_036963862.1 mRNA downstream 61819 42551212 ~ 42554425 (-) False LOC110526673
XM_036963627.1 mRNA upstream 5445 42964294 ~ 42987282 (-) True LOC110526985
XM_036963628.1 mRNA upstream 202919 43161768 ~ 43163012 (-) True LOC118944425
XM_036963798.1 mRNA upstream 221158 43180007 ~ 43198177 (-) False LOC110506858
XM_036963200.1 mRNA upstream 469809 43428658 ~ 43439196 (-) True LOC110506867
LOC118944426 mRNA upstream 822081 43780930 ~ 43792853 (-) True LOC118944426
TU2323493 other downstream 57341 42557797 ~ 42558903 (-) True G2031343
TU2323433 other downstream 154929 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 246335 42368254 ~ 42369909 (-) True G2031259
TU2323352 other downstream 269519 42343282 ~ 42346725 (-) False G2031225
TU2324292 other upstream 225787 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 232849 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 610311 43569160 ~ 43570054 (-) True G2032150
TU2324940 other upstream 920344 43879193 ~ 43881732 (-) True G2032544
TU2324949 other upstream 940651 43899500 ~ 43905240 (-) False LOC110526988

Expression Profile