RNA id: TU2323769


Basic Information

Item Value
RNA id TU2323769
length 3379
RNA type TUCP
GC content 0.43
exon number 2
gene id LOC110513924
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42616181 ~ 42958849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACAAGAGCCGGGACACAATGACACATTTTCTGTGCAAATGGAAACCATTTGAAGATCTATTCTAAATCAATTGATACGTCTTCTAAAGCCTTTGCCACTAATTGTTTTGAAGTGATGACCTTTTCCCCTTGTCTGTCTCTACCGCCAGGACGGCCCAGTGAACTGTGAGCGCTACCTCTCGTGGGCCAGTGCCTTCCTTGTGGTCTACAGCATAGACAATAGACGGAGCTTTGAGGGCTGCCAACAGTACCTGGAGGCCGTCACCGTCCACACCAAGGCCCTGCAGCCCAAGACCCCCATTATACTGCTGGGCAACAAGCTGGACATGGAGAGATACAGGCAGGTGAGTAAGTCGGACGGCTCGGCCCTCGCCACCCGTTTCGGCTGCCTGTTCTTCGAGGTGTCTGCTTGCCTGGACTTCCTGTCTGTCCAGCGGGTCTTCCATGAAGCCGTTAGGGAGGCCAGGCAGCTGGGCGGCAAAAGGAGCCCCCCGTTACGTCCCCTTTACATCAGTGAGGACAACAAGCCATTGTTCAGCCTCGCCACCGTGCCCCCGTTCACCACCCCCTGCTACAAGGAGCTCCCAGTGCCCGCCACCGCCAAGCTGGTGACGGTCAAGTCGTCACGGGCACAGAGCAAACGGCGGGCACCCACGCTGACGCTGCTCAAGGGCTTCAAGATCTTCTGATGAGTCGATGGAGAATGAGACCAGACTTAAAGAATGGAAATTTGAGACTTGTCTCAAACTTGTGCTCAAAGACTTGAAACTTATGCTCAAACCTTGAGACTTAACTTGGACTTGTGCCAGAGACTTGAGACTTGACTGAGTGTCTCAGGCTCGAAGACTTGACTCAACCTGGACTTTCCTAAAGTGACTTATTGACAAGTCTGCCATAGTGGCTTACAATATGGACAAGTGAGAGAACTGTGAAATAGGTTATGAGAGACAATGGACTGTGTCAAATGTGAAAAACGGAAGAAAATGGAGCCAGAATAACATACAACCAAGCCATCAACATACTGTATGCAGCAGAAGCTGTCATGGTGATATCACCTTCGTTGGAGCGTGTACCAAAACATCATGATGACTTACTGCACCTTCAAGTGAGGAGAAGGAACAGTAATTATCAGAGCTCCTTGAGAGATGGACAGTAATGGACTGGTGTTTAAACTGTCATTGTGAATGTTGAATTTATATTGCCAAAGTTTTCAAAGTTTGTCTTGAAGTCAGTTACTGGGACAAAGTTATGTTAGTTGCCAAATGTATTGTGGTGATTGGAGTGCATATGACGGTGATGGTGTGTTCACTGTAGTATAGATTGCTGACACTATGCACATgtatttttatatacattttaatAAGCTTTAAAGGAAAACTAATTTTATCGGTTGAAGACATATGTTGTTCATGTAGATACATGTTTTAAGTTATTTGATGTTATAACACAAAGTAGCAAGTCAATCTGAgtaaaaggcccagtgcagtcaaaattcagtttttctgtgttttatattgTACAACAgttgatgaaactaacactgtaaaagtgtgaaaaaTGGGATCAGTGTAATTTCCTGATAGGTGCTGgtttctaatcagcaggtttgcatggccgggagttttggctttccatggGGACATCACCATGCTATAAATTGGTTCATAGACAAATAACAAAGACAGTTCCAaacatctctgccaataacagctagttttcagttttcccctcccatctcagaccactcccagacagtctgagcgaaattcttgcttgagaaatatgTTTTTGCTAAAAAAGCATTTTTTGCCAATTtgaatggaaatctattacagtaaggtacttaattgctaCCCAgtaatgatttgatattgatatcaAAACAACTGCATTGGGGCTTTAACTTCATATATACATCGTTTTCACGAGTTGTGGGCGCCCTCCTCAGGCTCATCAGTGTAACAACGGTTGCATTTTTTATAACTTAAAACACAGTTTTATACTATTGTATGCTAATGCCATCCCAACCAAAATTACAAAACAGAACTATTTTGATATGAACAGTTTTATTTCCTTATTGTAAATACTGCAATTGTTGGAATGCTTTTATAACACAATGAAAATCTATCTTACATATGGAGAGGTGGTGTGATGACAAAAGTTAACCCACTGAAttctgttttctatccaaaacaTCTATATGTGAATACTCTCTCACAAGAGCGTTCCACTATACTCACAGCAAGATCATTCCAGTTTGTATTAtattaggatccccgttagctgATGCCATGACGTCGGCTAATCTTCCTGGTGGCCAGCATTATAACTAAAAATACTGTACAAATACAATTACAAACGAGATGTATAAAGATAAGTTTGATCTTCCAATCTTAATGTTATCTCAGACCATGTTTAGTTGCCTTTTAGTGTTTCCCAAGTAGACTACACTTGAATAGCTTATGACACATGGTTTATAAGTGTTCCTACATACTGTCAAGAGACATAGGAAAACTTTTCACTGCACTATAAACAACACGTTGCACTTCTTCATGaccaaaaaacaacatttacTAACTATTTGGTATCCCAAATAGTTGGTTGCGATGTTTCGACGGCCAGCAATGTTTACAGTAGATGTATATTCCATTGCTGAAACTGCAAACAACAAAGTACTTGTGAATGATGACTGTGATACTGCACGTCTTGTACACAGCATTATttgtagtagttgtatacccttttcacactactgagccaagTCAAGCTGTACTGCGCTGGCATGGTTACGCATCCACCAATAAAATATCTGGCTCAGCACAGTACGGTCTGGCTCAGCACAGTAGTGTAAAATGGGCATTACAGTAATTACAGTGGTTGTTTAAGTTACAGGTCAAAATAAAACAACTTAAAAGGACAGTTATTCCTAAGTAAATAGGAGTTTATGTTCTGCCTCTGCAGAGGAGCAGTAATGAGGAACGTGGCTGTtatatctctctccttcatccctcTACCACCACTCCCTCTTCTGcctcctctttctctacctcaaccacctcctctttcttcaacacctcctctttctctacctccgcCAACACCTCCACTTCCCCCTCAGGCTCGGGGTACAGGCTGGACACGTTCCCGTCATTCCAGGTCACCACAATGTCCCCCGGTTTGAGCCCCTCTACCTCCCCGTTGTCCTGGAGGGGCTTGGCCTGGCTCACTGGGATCTCAGATGGGCTCATACTGACCTGGACATAGGCACTATTGACGGAGTTAGTTCTTTGACCTCCAACTTCCGTGACGATGACCTGTAGTTCTTCCGCCTCCGGCTTCATGGCCAGAGCCGCCGCCTTGTACTTGGCTATCTTATT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323752 lncRNA downstream 24379 42591575 ~ 42591865 (-) True G2031519
TU2323751 lncRNA downstream 24743 42591273 ~ 42591501 (-) True G2031518
TU2323482 lncRNA downstream 27597 42588338 ~ 42588647 (-) True G2031332
TU2323515 lncRNA downstream 28390 42587601 ~ 42587854 (-) True G2031357
TU2323492 lncRNA downstream 58663 42557352 ~ 42557581 (-) True G2031342
TU2323773 lncRNA upstream 5476 42627022 ~ 42629418 (-) True ubap1lb
TU2323796 lncRNA upstream 26219 42647765 ~ 42648170 (-) True LOC118936599
TU2323792 lncRNA upstream 121087 42742633 ~ 42743952 (-) True G2031538
TU2323905 lncRNA upstream 248551 42870097 ~ 42870520 (-) True G2031638
TU2323915 lncRNA upstream 289571 42911117 ~ 42911423 (-) True G2031647
XM_036963166.1 mRNA downstream 7378 42603751 ~ 42608866 (-) True LOC118944394
XR_005039698.1 mRNA downstream 50554 42564249 ~ 42565690 (-) True LOC118944434
XR_005039697.1 mRNA downstream 50557 42564249 ~ 42565687 (-) False LOC118944434
XM_021607813.2 mRNA downstream 61735 42551212 ~ 42554509 (-) True LOC110526673
XM_036963862.1 mRNA downstream 61819 42551212 ~ 42554425 (-) False LOC110526673
XM_036964150.1 mRNA upstream 7132 42628678 ~ 42642253 (-) False ubap1lb
XM_036964102.1 mRNA upstream 21358 42642904 ~ 42646488 (-) False LOC110526685
XM_036964103.1 mRNA upstream 21358 42642904 ~ 42646490 (-) True LOC110526685
XM_036963638.1 mRNA upstream 26219 42647765 ~ 42668743 (-) False LOC118936599
XM_036963938.1 mRNA upstream 65334 42686880 ~ 42704712 (-) False LOC110526688
TU2323493 other downstream 57341 42557797 ~ 42558903 (-) True G2031343
TU2323433 other downstream 154929 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 246335 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 269519 42343282 ~ 42346725 (-) False G2031225
TU2324292 other upstream 563090 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 570152 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 947614 43569160 ~ 43570054 (-) True G2032150
TU2324940 other upstream 1257647 43879193 ~ 43881732 (-) True G2032544
TU2324949 other upstream 1277954 43899500 ~ 43905240 (-) False LOC110526988

Expression Profile