RNA id: XM_036963152.1



Basic Information


Item Value
RNA id XM_036963152.1
length 1737
RNA type mRNA
GC content 0.45
exon number 9
gene id spg21
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42674297 ~ 42681389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaggaagtaATTTAAGAATGTTGAAACACGCCCCTGAGCATCACGGAAGTGCGTGCAAGTAATGTCATATGACTTGTTCAGAACGAGAAATAAAATGTTGCTAATCTGTGGATAAAAGTGGACCTTAACGGTGAATGATATCCAAAGCAAACACGAAATGGAGGAGATAAGAATATCTCCTGATTACAACTGGTTCAGAAGCACAGTGCCACTTAAAAAAATTATAGTGGACGACGATGACAGCAAGGTGTGGTCCTTGTATGACGCAGGCCCAAAGAGCATCAGGTGTCCCATCATATTCCTTCCCCCTGTGAGTGGGACAGCAGAGGTGTTCTTCCAGCAGGTCTTAGCCCTGACAGGCTGGGGCTACAGAGTCATCTCActGCAGTATCCTGTTTATTGGGATCTCTTGGAGTTCTGTGATGGATTTCGGAAGCTTCTTGATCACTTGCATTTGGACAAGGTCCATCTATTTGGTGCTTCTCTGGGCGGCTTCCTGGCCCAGAAGTTTGCCGAGCACACACACAAGTCTCCCAGAGTCCACTCTCTGATCCTGTGCAACTCCTTCAGTGACACCACCATCTTCAACCAGACATTGACAGCCAACAGCTTTTGGTTGATGCCCGCCTTCATGTTGAAGAAGATTGTCCTGGGGAACTTCGCTAAAGGACCTGTCGACCCCAAGATGGCCGACGCAATCGACTTTATGGTCGACAGAcTGGAGAGCCTGAACCAGGGTGAGCTAGCCTCCAGACTAACACTCAACTGTCAGAACTCCTACGTGGAGCCTCACAAGATAAAGGACCTGGCTGTCACCATTATGGATGTGTTCGACCAGAGTGCCCTGTCACACGAGGCGAAAGAGGAAATGTATAAGCTGTATCCAAATGCCAGACGGGCTCACCTCAAAACGGGTGGAAACTTCCCCTACCTGTGTAGGAGTGCTGAGGTCAACCTATACATACAGATTCACCTGCGGCAGTTCCACGGGACGCGGTACGCCGCCATCAACTCGGACATGGTGAGCGCCGAGGAGCTGGAGGTGCAGAAGAGCCACCTGGTGAATAGCGCCAACGACCAATGACGAGACTGTTACCCAgcaccttctcctctctcccagctctGACCGGCAGGCCAGAACCATAGAATCGGATTGGCTGATTCTGTGGGGCAGAACTATGGGAACTACGTTTCCCTGACCAGCAAAACAGCCAAGAAAAAGTCAACCATAGAAATTAGAATGACTCAATTCTATTTCTGTATTTCTATGATCTCAACCATCATCACCCAGTCACCACGACTGGTCACACGGATCTATGGATCCACTTGTTAAAAAAGGTCATCTCTTCACCTGATCTTCTTTCTGTTTTTTCTACGATATTGAATACAATCAATCCACAAGTTGAACTGATACTATTTTTACTttacagttaaaaatatatattttaattatcACTGTTACTGTAAATAGAGCGTAATTGGCTACGTTGCTTTGAGAGAAGAAACGCCATGTTATGAACCTTTTGCCTTATGTGATATAAATCTCATGCATTTAATTGATGTTGCACTTTTGAATTCCATGTTTTTCCTTCTATGTTTATGGTTAACTCTGCCAACCGTGGCGATACTTGGTAAGCTAGAAAACCTGCACTGATTAGATATACAGCGGAGGATGTTAGTCAGAAGAAATAATGTTAAATTTAATTTGTAATTTAATAAAGCCTTCTTGAAAACATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2323553 lncRNA upstream 24668 42647769 ~ 42649629 (+) True G2031379
TU2323522 lncRNA upstream 83906 42590021 ~ 42590391 (+) True G2031358
TU2323299 lncRNA upstream 85640 42588359 ~ 42588657 (+) False G2031198
TU2323300 lncRNA upstream 85683 42588359 ~ 42588614 (+) True G2031198
TU2323296 lncRNA upstream 86450 42587583 ~ 42587847 (+) True G2031197
TU2323585 lncRNA downstream 22452 42703841 ~ 42708770 (+) True G2031405
TU2323624 lncRNA downstream 43553 42724942 ~ 42737368 (+) True G2031417
TU2323600 lncRNA downstream 45493 42726882 ~ 42741057 (+) False LOC118944566
TU2323601 lncRNA downstream 45493 42726882 ~ 42748573 (+) False LOC118944566
TU2323602 lncRNA downstream 45493 42726882 ~ 42731919 (+) False LOC118944566
XM_021593567.2 mRNA upstream 47266 42624304 ~ 42627031 (+) True LOC110513925
XM_036963167.1 mRNA upstream 56724 42609361 ~ 42617573 (+) False si:cabz01068815.1
XR_005039921.1 mRNA downstream 49207 42730596 ~ 42740551 (+) False LOC118944566
XM_036963436.1 mRNA downstream 120481 42801870 ~ 42867805 (+) False LOC110511523
XM_036963435.1 mRNA downstream 120482 42801871 ~ 42878245 (+) False LOC110511523
XM_036963434.1 mRNA downstream 120483 42801872 ~ 42886938 (+) False LOC110511523
XM_036964406.1 mRNA downstream 240498 42921887 ~ 42930481 (+) True LOC110526703
TU2323556 other upstream 19801 42651759 ~ 42654496 (+) True G2031381
TU2323200 other upstream 353896 42319310 ~ 42320401 (+) True G2031110
TU2322397 other upstream 951916 41705083 ~ 41722381 (+) False LOC110526920
TU2323568 other downstream 4249 42685638 ~ 42687128 (+) True G2031390
TU2324456 other downstream 857601 43538990 ~ 43539362 (+) True G2032117
TU2324644 other downstream 1095198 43776587 ~ 43777009 (+) True LOC110506879
TU2325506 other downstream 1949086 44630475 ~ 44630763 (+) True G2033013
TU2325681 other downstream 2281681 44963070 ~ 44967510 (+) False LOC110516695

Expression Profile


XM_036963152.1 Expression in all Baseline Samples

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XM_036963152.1 Expression in each Bioproject

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XM_036963152.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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