RNA id: TU2324286



Basic Information


Item Value
RNA id TU2324286
length 761
RNA type TUCP
GC content 0.58
exon number 4
gene id LOC110506858
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 43180007 ~ 43198177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTCGCTCAACTCGCTCCTCCCGACGAAGCGGCGCCGGCCCGTCCAGCACCAGTCCAACCCGGCTCTCCCGAAGCCAGGAGAAAGAGGAGCTTAGCCACCTGAACGACCGCCTGGCCGCCTACATAGAGCGGGTCCGCCAGCTGGAGAATGACAAGTCCTCAATGCTGCTTCtcctggaggagaaagaggagtccACGACCCGGGAGACGGCCAACGTTCGGCGGCTGTACGAGACCGAGTTGGCCGACGCGAGGAAGAGCTTGGACGTGCTGGCTAACGACAGGGCCCGGCTGCAGATAGAGATGGGTCATCTTTCTGAAGAGCATAGCAACCTACAAGCCAGGAACCAGAAGAAGGAAGCAGAGTGTAACATGGCCATGGGTCAGTGGAGGAACTTGGAGGCGGTCCTCAACTCTAAAGACGCAGAGCTGGCCAATCAACTGGCAGATAACAGAAGACAGGCGGATGACGTCACTGACCTACAGGCCCAGGTGGCCAATTTGGAGTGTGCGCTGGCGGAGACTAAGACCCAGCTGAACTCTGAGATGTTGAGGAGGGTGGACCTGGAGAACCAGGTGCAGACGCTACGGGAACAGCTGGAGTTCCAGAGACACATTGGcgaacaggaggtcAGGGAGATCCGGAGCAGACATGAGAGTCGCCTGGTGGAGGTGGATTCTGGGAGACAGAAAGAATTTGAGAGTAAGTTGGCTGAGGCCATGCAGCAGCTACGGCAGGAGCACGACGGACAAATCCAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2324290 lncRNA downstream 14632 43176713 ~ 43177066 (-) True G2031972
TU2324287 lncRNA downstream 17509 43173929 ~ 43174189 (-) True G2031969
TU2324283 lncRNA downstream 20793 43170672 ~ 43170905 (-) True G2031965
TU2324281 lncRNA downstream 21262 43170138 ~ 43170436 (-) True G2031963
TU2324276 lncRNA downstream 30801 43160474 ~ 43160897 (-) True G2031961
TU2324304 lncRNA upstream 7832 43205660 ~ 43205874 (-) True G2031983
TU2324368 lncRNA upstream 194482 43392310 ~ 43392543 (-) True G2032041
TU2324371 lncRNA upstream 209671 43407499 ~ 43407759 (-) True G2032044
TU2324372 lncRNA upstream 211827 43409655 ~ 43410059 (-) True G2032045
TU2324376 lncRNA upstream 215559 43413387 ~ 43414307 (-) True G2032049
XM_036963628.1 mRNA downstream 28686 43161768 ~ 43163012 (-) True LOC118944425
XM_036963627.1 mRNA downstream 204416 42964294 ~ 42987282 (-) True LOC110526985
XM_036964081.1 mRNA downstream 236994 42940158 ~ 42954704 (-) True LOC110526700
XM_036964082.1 mRNA downstream 237119 42940157 ~ 42954579 (-) False LOC110526700
XM_036963578.1 mRNA downstream 274873 42906669 ~ 42916825 (-) True LOC110526696
XM_036963200.1 mRNA upstream 230830 43428658 ~ 43439196 (-) True LOC110506867
LOC118944426 mRNA upstream 583102 43780930 ~ 43792853 (-) True LOC118944426
XM_036963442.1 mRNA upstream 698187 43896015 ~ 43949012 (-) False LOC110526988
XM_036963439.1 mRNA upstream 701583 43899411 ~ 43949007 (-) False LOC110526988
XM_036963441.1 mRNA upstream 701583 43899411 ~ 43949011 (-) False LOC110526988
TU2324292 other downstream 5974 43184636 ~ 43185724 (-) True G2031974
TU2323769 other downstream 570152 42616244 ~ 42621546 (-) True LOC110513924
TU2323493 other downstream 632795 42557797 ~ 42558903 (-) True G2031343
TU2323433 other downstream 730383 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 821789 42368254 ~ 42369909 (-) True G2031259
TU2324491 other upstream 371332 43569160 ~ 43570054 (-) True G2032150
TU2324940 other upstream 681365 43879193 ~ 43881732 (-) True G2032544
TU2324949 other upstream 701672 43899500 ~ 43905240 (-) False LOC110526988
TU2325823 other upstream 1656025 44853853 ~ 44923017 (-) True LOC110506903
TU2325845 other upstream 1741410 44939238 ~ 44956893 (-) True LOC110506178

Expression Profile