RNA id: TU2324949


Basic Information

Item Value
RNA id TU2324949
length 506
RNA type TUCP
GC content 0.59
exon number 4
gene id LOC110526988
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 43896015 ~ 43949012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAacactcccctctcccctggCCCCGACAGCAATGAGAATAGCTTCTCTGTCAGCCTATCTGATCTGAGGCAGTGTACCATTGagcggggggaggagggaggggacctGGTCTCACGCCCATCTCCGTCAGCATGTGCCCACTCTGTTATCTCAGCCATCCCTCCACAGGAAATACAGACCATGATCCAGGAAGTGAAAGCTCTGGATGAGGAAACACTGAAGCAATTTGAGCACATCCAAGTGGTGATTCTGCACAAGGAGGAAGGAGCAGGTCTGGGTTTCAGCATTGCAGGTGGGATAGACCTGGAGAGCAAGGCTACCACAgtGCATCGTGTTTTCCCCCACGGCCTGGCGGCTCAAGAGGGGACCGTGGAGAAGGGTGACGAGGTGCTGTCCATCAACGGCCAGACACTAAGGGGTGCGACACACGCGGACGCCACCGCCACGCTGCGCCAGGCCCGCACCATGAGACTGGCCGTGGTGGTGGTAagcaaggggagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2324951 lncRNA downstream 1341 43896112 ~ 43898159 (-) False LOC110526988
TU2324950 lncRNA downstream 3894 43892424 ~ 43895606 (-) True G2032552
TU2324948 lncRNA downstream 7721 43889134 ~ 43891779 (-) True G2032550
TU2324945 lncRNA downstream 12164 43886873 ~ 43887336 (-) True G2032549
TU2324942 lncRNA downstream 15746 43883462 ~ 43883754 (-) True G2032546
TU2324952 lncRNA upstream 8641 43913881 ~ 43918187 (-) True LOC110526988
TU2324956 lncRNA upstream 14119 43919359 ~ 43919667 (-) True G2032558
TU2324959 lncRNA upstream 20557 43925797 ~ 43926019 (-) True G2032561
TU2324989 lncRNA upstream 59765 43965005 ~ 43969942 (-) True G2032586
TU2325006 lncRNA upstream 80067 43985307 ~ 43988402 (-) True G2032595
LOC118944426 mRNA downstream 106647 43780930 ~ 43792853 (-) True LOC118944426
XM_036963200.1 mRNA downstream 460304 43428658 ~ 43439196 (-) True LOC110506867
XM_036963798.1 mRNA downstream 701323 43180007 ~ 43198177 (-) False LOC110506858
XM_036963628.1 mRNA downstream 736488 43161768 ~ 43163012 (-) True LOC118944425
XM_036963627.1 mRNA downstream 912218 42964294 ~ 42987282 (-) True LOC110526985
XM_021607869.2 mRNA upstream 92485 43997725 ~ 44001493 (-) True LOC110526712
XM_036963448.1 mRNA upstream 111783 44017023 ~ 44130860 (-) False LOC110526709
XM_036963451.1 mRNA upstream 111783 44017023 ~ 44130860 (-) False LOC110526709
XM_036963446.1 mRNA upstream 111783 44017023 ~ 44183846 (-) False LOC110526709
XM_036963447.1 mRNA upstream 111783 44017023 ~ 44183846 (-) False LOC110526709
TU2324940 other downstream 17768 43879193 ~ 43881732 (-) True G2032544
TU2324491 other downstream 329446 43569160 ~ 43570054 (-) True G2032150
TU2324286 other downstream 701672 43191698 ~ 43197828 (-) True LOC110506858
TU2324292 other downstream 713776 43184636 ~ 43185724 (-) True G2031974
TU2323769 other downstream 1277954 42616244 ~ 42621546 (-) True LOC110513924
TU2325823 other upstream 948613 44853853 ~ 44923017 (-) True LOC110506903
TU2325845 other upstream 1033998 44939238 ~ 44956893 (-) True LOC110506178
TU2326479 other upstream 1433857 45339097 ~ 45358692 (-) True LOC110506182
TU2326571 other upstream 1678518 45583758 ~ 45588702 (-) True LOC110511667
TU2326647 other upstream 1849756 45754996 ~ 45759682 (-) True G2033970

Expression Profile