RNA id: TU2277346


Basic Information

Item Value
RNA id TU2277346
length 2710
RNA type TUCP
GC content 0.47
exon number 2
gene id G1990760
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 3502951 ~ 3515660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagtcaaaaAGGCACTGCATGATGACATCAGGCTTGTAAAGGGAAGGGTGCTCAGGGAAAAAGAACAGTGACAGTCGAGTTGACACTGTGGAGAAGCAAAGCTCCAAACAGTATTTCACAGCTGAACCAGTGAGAAAACAGGTCAAAGGGTTGGATCTTCTTGGTGTGAAATCATCAGACAGAAGACGAGGGCAACAAACATTGCATAGTTATACTTTccttgaagaagaaaaaaaaaaaggtgcaatctagaaccctttgaagaacccttgttgattccaggtagaaagaaccctttcggttccaagtagaaccttccacagagggttctacagtACATGGAACAAAAAAGGTtttttttacctggaaccaaaaatggttctcctatggagacagccgaagaacccttttggaacccttttttctaagagtgaagAGGAACCCTTTTCACATTTAAAAAGTAAAATCAATTATACATAAATAGAAAGCTATACTTTTGAGTTTATAAAGAGTTTTTATTTACACTGAGAGGCGTGTTCAGATTAGTACCCCAAAAAACATATGGAAGAAATACAAGATGTGCCTCATTCCGTTGTATTTTGAAGACATTTATAGTGCGCGCGACAAAACTGCTCGTGAAGAAGAAGCAGGTACCACAGTATAACACGTTTGCAGTCGTTTGCTGCGGCGTTTAATTCCGTCCATAGATCTCCCCGACGTGTGAATGCTGACACAGCAGACAGCAGCAGGATACGTGTTCTAGCTGTCACCTTTATATGGTCTTAATGTCTGAACAGCAAATACATGGAAACACTCTGATCACCGCTCAGATTGGGTTTTGTTTTGCATAAAAAATAAACTCATGTGGAAAGCTGTGTGCACTTTGCAGTTGAATAATACACTGTAGCTCTATAAGTCAAATGCACACATGTTTAGTTTAGTAAGACAAGAACATGGTATTGAGATGCTAACGTTAAAACATGAACATCGAGCAGGCTAGTGATTATTGTGAAAATCATGCCCCTGTTCCTTCAGCTGCACTGATATGTTGTTTTTGCGTGGCTAAACACACAATGTTATATAATAAAAaggcacacgcacgcgcacacacgcacacacacacacacacacacacacacacacacacacacaaacaacacaggtCCACTGTTAAAACGTGGAGAAATGAGCTTATTGTTTAAAGTACAGAAGGCGTGTATACCTCAGCTGCCCTGTCTCTCCTGAAGAAACAAACTGTTGTAGTCACAATCTGTCAGATCAATCTATAGCGTGTAGGCTATATCCAGGAGACGTGTACAAGTAAGTGTTTAAAAGTCCCCAATGTAAAAGCTACTATAGTCCGTGTTCACTGGCAGTTGGCCAATGGTTTGAAAGATCCATCGGGAAGTTGTCTGAAGATGCCCCTTAACGTGTCCAGTTCTCGGGTAAGATGTTCCACTCTCTTCCGCAGTCTTTCGTTGTCCGACGCCAGCTCGATCACTTTATGCTGCGTCTCAACATTGCGCATTTTCGCCTTGTCTCTACTCTTCCTCACCGCGACGTTGTTCCTCTCCCGCCTCAACCGGTACTCCGTGCTGGCCTTGTCGACGCGTTTTTTGGATTTACCCcggtctcggtctcggtctcggtCGTCGCGTCCCATCATCTTCATGGATCCAACGGAGGACATGCTGCCGTCCCTGTGGTGTGGACTCGGGACGGGCGTCGGTGGAGGCGTCGGGTGTCCCGGTTGGAGATGCATGGTCGTCTGCGCGCAGTGCGCAATCTGGTACTGAAGATGGGATAGGTGCTGTGGCAGATGCTGGTGGGAATGGTGGTAGGTTGGAGGCATAGAATGGCTCATTTCATCTTCTTCTCTGGGCTCTTGCTTTATCGCCACAGGTCTGATTCTCGTGGACTGGTTATCGTAAATGGGTTCAAGTTTAGATGTGTCCATATACCCGGGAATACAACCATAGCCCTgctgctgatgctgctgctgctgctgttggtgGTGGTGCGCCCCCGAGCCAGAACTCACCCCGTGGGGGTAGGATTCGTACTCACTGTTCGCCAGCTTGAGTTTCTCTTGCTTCGAGCTGTTGTGGAATAGATCAGCCAGGAACTCGTCGTTGAAGGCTGCAGGGTCGATGTAAGCGCTGATGTCAATGGAGTTTTCGTTCTCACAGATCTCGCCGAGGTCTCCTCCTGCTCCGGGTCCAGCAGCGGAGGGGTCTTTGTAGCAGTAGGCGCTTTGCTGACTCTGACTCTGGGCTAGGCTGGTCATTAGGGGTCGTGGGGCGACCTCGTAGAGGTTTGGTTGCTCCATGGAATATCTATAACCCGCCAGACATGGTGAGGAGCTGCGGGAATCCAGCTTGCTCACAGTACCGGAGGAAGCCGCACTGGCTAGACGAATAAACAGGACAGCTCCTTCACAGGTGCGCTCTCCAGGTATGAAGTAAAACTCTAACTCGCCACGAGAAGCTATAAACTAAATGCCTTGAATAAAGCCTAGTGACTTTCCCTGGTACGACTGGTTTCTCGAGACTATAGTTCAAAAGTACACTGTTTTAGCTGCAGGTTGAACTACTCCAGGCTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2277377 lncRNA downstream 22768 3479757 ~ 3480183 (-) True G1990784
TU2277376 lncRNA downstream 31548 3470742 ~ 3471403 (-) True G1990783
TU2277365 lncRNA downstream 55404 3447347 ~ 3447547 (-) True G1990776
TU2277363 lncRNA downstream 72023 3430538 ~ 3430928 (-) True G1990774
TU2277362 lncRNA downstream 72661 3429814 ~ 3430290 (-) True G1990773
TU2277408 lncRNA upstream 40722 3556382 ~ 3558006 (-) True G1990806
TU2277420 lncRNA upstream 71868 3587528 ~ 3588034 (-) True G1990817
TU2277427 lncRNA upstream 104582 3620242 ~ 3621467 (-) True G1990823
TU2277434 lncRNA upstream 114207 3629867 ~ 3630214 (-) True G1990828
TU2277468 lncRNA upstream 213325 3728985 ~ 3730145 (-) True G1990860
XM_036964368.1 mRNA downstream 10201 3477158 ~ 3492750 (-) False LOC110506223
XR_005039677.1 mRNA downstream 317159 3184939 ~ 3185792 (-) False LOC118944414
XM_036963276.1 mRNA downstream 385708 2958963 ~ 3117243 (-) False LOC118944401
XM_036963774.1 mRNA upstream 558385 4074045 ~ 4158044 (-) False LOC110516700
XM_036963773.1 mRNA upstream 558392 4074052 ~ 4158044 (-) False LOC110516700
XM_036964019.1 mRNA upstream 854722 4370382 ~ 4390965 (-) False LOC110498670
XM_036964018.1 mRNA upstream 854722 4370382 ~ 4390993 (-) False LOC110498670
XM_036963685.1 mRNA upstream 924173 4439833 ~ 4503872 (-) False LOC118944435
TU2277351 other downstream 20310 3481462 ~ 3482641 (-) True LOC110506223
TU2277022 other downstream 214453 3287167 ~ 3288498 (-) True G1990495
TU2276705 other downstream 507526 2987325 ~ 2995425 (-) True LOC118944401
TU2276704 other downstream 519549 2971669 ~ 2983402 (-) False LOC118944401
TU2276701 other downstream 532094 2959512 ~ 2970857 (-) False LOC118944401
TU2277524 other upstream 294545 3810205 ~ 3810560 (-) True G1990907
TU2277556 other upstream 356940 3872600 ~ 3873176 (-) True G1990926
TU2277557 other upstream 359255 3874915 ~ 3880013 (-) True G1990927
TU2277761 other upstream 604482 4120142 ~ 4158029 (-) True LOC110516700
TU2278185 other upstream 941999 4457659 ~ 4504360 (-) True LOC118944435

Expression Profile