RNA id: TU2278251


Basic Information

Item Value
RNA id TU2278251
length 253
lncRNA type intronic
GC content 0.57
exon number 2
gene id G1991392
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 4491226 ~ 4491582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGCTGGAGCGAACTGGGGGGTATGGAGGAAGGGGAGGGTGGGGGTCTCCATGTTACCGGACTGAGAGGCCCCGTTGTGGGCATGAAGGTCAACaactgttctggacgactgtgtgatctcgtTCTCCGTAggcaatgtgagtaagacctttaaacaggttaacattggAAACGCCGCGggggccagacggaataccaggcTCACATTCATACTGCTACTCCAGTCCCGATACAGAccacagtgcccccccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2278248 lncRNA downstream 4275 4485582 ~ 4486951 (-) True G1991390
TU2278210 lncRNA downstream 37284 4453029 ~ 4453942 (-) True G1991370
TU2278187 lncRNA downstream 55887 4434859 ~ 4435339 (-) True G1991351
TU2278188 lncRNA downstream 62108 4428912 ~ 4429118 (-) True G1991352
TU2278142 lncRNA downstream 100242 4389083 ~ 4390984 (-) True LOC110498670
TU2278260 lncRNA upstream 8121 4499703 ~ 4500245 (-) True G1991398
TU2278261 lncRNA upstream 13056 4504638 ~ 4505167 (-) True G1991399
TU2278262 lncRNA upstream 14092 4505674 ~ 4507545 (-) False G1991400
TU2278263 lncRNA upstream 14092 4505674 ~ 4506040 (-) False G1991400
TU2278264 lncRNA upstream 14092 4505674 ~ 4507100 (-) True G1991400
XM_036964018.1 mRNA downstream 100233 4370382 ~ 4390993 (-) False LOC110498670
XM_036964019.1 mRNA downstream 100261 4370382 ~ 4390965 (-) False LOC110498670
XM_036963774.1 mRNA downstream 333182 4074045 ~ 4158044 (-) False LOC110516700
XM_036963773.1 mRNA downstream 333182 4074052 ~ 4158044 (-) False LOC110516700
XM_036964368.1 mRNA downstream 998476 3477158 ~ 3492750 (-) False LOC110506223
XM_036963883.1 mRNA upstream 227070 4718652 ~ 4972108 (-) False LOC110526851
XM_036963884.1 mRNA upstream 227070 4718652 ~ 4972108 (-) False LOC110526851
XR_005039793.1 mRNA upstream 248334 4739916 ~ 4741747 (-) True LOC118944456
XM_021605003.2 mRNA upstream 482207 4973789 ~ 4975290 (-) True LOC110525056
XM_036964493.1 mRNA upstream 552198 5043780 ~ 5086440 (-) False LOC110515683
TU2278238 other downstream 16962 4473753 ~ 4474264 (-) True G1991382
TU2278237 other downstream 17609 4473282 ~ 4473617 (-) True G1991381
TU2277761 other downstream 333197 4120142 ~ 4158029 (-) True LOC110516700
TU2277557 other downstream 611213 3874915 ~ 3880013 (-) True G1990927
TU2277556 other downstream 618050 3872600 ~ 3873176 (-) True G1990926
TU2278312 other upstream 95145 4586727 ~ 4587870 (-) False G1991436
TU2278541 other upstream 357655 4849237 ~ 4853755 (-) True LOC110526851
TU2278677 other upstream 553424 5045006 ~ 5085686 (-) True LOC110515683
TU2278960 other upstream 766140 5257722 ~ 5259782 (-) True G1991846
TU2279753 other upstream 1216686 5708268 ~ 5708684 (-) True G1992375

Expression Profile