RNA id: TU2278562


Basic Information

Item Value
RNA id TU2278562
length 461
lncRNA type intronic
GC content 0.44
exon number 3
gene id G1991617
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 4803360 ~ 4805143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggttaggtcttcattctgagtggtgaaggttaggtcttcattctgagtggtgaaggttaggtcttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtattcattctgagtggtgaaggttaggtattcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtcttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtgttcattctgagtggtgaaggttaggtattcattctgagtggtgaaggttaggtgttcattctgagtggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2278558 lncRNA downstream 6397 4796595 ~ 4796963 (-) True G1991613
TU2278557 lncRNA downstream 7227 4795848 ~ 4796133 (-) True G1991612
TU2278551 lncRNA downstream 35061 4768081 ~ 4768299 (-) True G1991606
TU2278534 lncRNA downstream 68298 4726070 ~ 4735062 (-) False LOC110526851
TU2278535 lncRNA downstream 73685 4726070 ~ 4729675 (-) False LOC110526851
TU2278563 lncRNA upstream 2650 4807793 ~ 4808601 (-) True G1991618
TU2278564 lncRNA upstream 11594 4816737 ~ 4817318 (-) True G1991619
TU2278566 lncRNA upstream 20501 4825644 ~ 4825904 (-) True G1991621
TU2278568 lncRNA upstream 24274 4829417 ~ 4830193 (-) True G1991622
TU2278575 lncRNA upstream 32228 4837371 ~ 4837688 (-) True G1991626
XR_005039793.1 mRNA downstream 61613 4739916 ~ 4741747 (-) True LOC118944456
XM_036963683.1 mRNA downstream 102876 4439833 ~ 4700484 (-) False LOC118944435
XM_036963684.1 mRNA downstream 102876 4439833 ~ 4700484 (-) False LOC118944435
XM_036963685.1 mRNA downstream 299488 4439833 ~ 4503872 (-) False LOC118944435
XM_036964018.1 mRNA downstream 412367 4370382 ~ 4390993 (-) False LOC110498670
XM_021605003.2 mRNA upstream 168646 4973789 ~ 4975290 (-) True LOC110525056
XM_036964493.1 mRNA upstream 238637 5043780 ~ 5086440 (-) False LOC110515683
XM_036964549.1 mRNA upstream 338588 5143731 ~ 5147310 (-) True LOC110515681
XM_036963437.1 mRNA upstream 444136 5249279 ~ 5301650 (-) False LOC118944412
XR_005039675.1 mRNA upstream 444136 5249279 ~ 5301650 (-) True LOC118944412
TU2278312 other downstream 215490 4586727 ~ 4587870 (-) False G1991436
TU2278185 other downstream 299000 4457659 ~ 4504360 (-) True LOC118944435
TU2278238 other downstream 329096 4473753 ~ 4474264 (-) True G1991382
TU2278237 other downstream 329743 4473282 ~ 4473617 (-) True G1991381
TU2277761 other downstream 645331 4120142 ~ 4158029 (-) True LOC110516700
TU2278541 other upstream 44094 4849237 ~ 4853755 (-) True LOC110526851
TU2278677 other upstream 239863 5045006 ~ 5085686 (-) True LOC110515683
TU2278960 other upstream 452579 5257722 ~ 5259782 (-) True G1991846
TU2279753 other upstream 903125 5708268 ~ 5708684 (-) True G1992375
TU2279911 other upstream 1181288 5986431 ~ 5988773 (-) True G1992485

Expression Profile