RNA id: TU2279799


Basic Information

Item Value
RNA id TU2279799
length 515
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1992400
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5791997 ~ 5792667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggccagtaactgatatgtaggctagtggttagagcgttgggccagtaactgaaaggtagcctagtggttagagcgttgggccagtaactgatatgtaggctagtggttagagcgttgggccagtaaccgatatgtagcctagtggttagagcgttgggccagtaacagataggtagcctagtggttagagcgttgggccagtaaccgatatgtagcctagtggttagagcgttgggccagtaaacgaaaggtagcctagtggttagagcgttgggccagtaaccgaaaggttcctGGATCGAATTCCCGAACttacaaggtaaacatctgtagttctgctcctgagcaaggcagttaacccactgttccctggacGCTGAaaacgtggatgttgattatatcagcccccacacctctgattcagatgggttgggttaaatgtggaaggtccaatgcattcagttgtacaactgactaggtatcctcctttcCCTCTATGCAGCAAGTGGGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2279734 lncRNA downstream 3673 5787385 ~ 5788324 (-) True G1992358
TU2279785 lncRNA downstream 45686 5745761 ~ 5746311 (-) True G1992389
TU2279736 lncRNA downstream 46355 5744153 ~ 5745642 (-) True G1992360
TU2279783 lncRNA downstream 51338 5732424 ~ 5740659 (-) True G1992388
TU2279765 lncRNA downstream 65841 5725926 ~ 5726156 (-) True G1992385
TU2279803 lncRNA upstream 2421 5795088 ~ 5795367 (-) True LOC110519162
TU2279833 lncRNA upstream 57882 5850549 ~ 5851406 (-) True G1992424
TU2279852 lncRNA upstream 75590 5868257 ~ 5868949 (-) True G1992437
TU2279853 lncRNA upstream 78254 5870921 ~ 5872098 (-) True G1992438
TU2279863 lncRNA upstream 97172 5889839 ~ 5891360 (-) True G1992447
XM_036963394.1 mRNA downstream 30992 5749526 ~ 5761005 (-) False LOC110514656
XR_005039665.1 mRNA downstream 30992 5749756 ~ 5761005 (-) True LOC110514656
XM_036964484.1 mRNA downstream 94738 5662576 ~ 5697259 (-) True usp8
XM_036964485.1 mRNA downstream 94739 5662576 ~ 5697258 (-) False usp8
XR_005039675.1 mRNA downstream 490347 5249279 ~ 5301650 (-) True LOC118944412
XM_036963740.1 mRNA upstream 2421 5795088 ~ 5816738 (-) False LOC110519162
XM_036963741.1 mRNA upstream 7325 5799992 ~ 5816747 (-) False LOC110519162
XM_036963383.1 mRNA upstream 256687 6049354 ~ 6099205 (-) False LOC110517106
XM_036963382.1 mRNA upstream 256687 6049354 ~ 6099209 (-) False LOC110517106
XM_036963387.1 mRNA upstream 256687 6049354 ~ 6099209 (-) False LOC110517106
TU2279753 other downstream 83313 5708268 ~ 5708684 (-) True G1992375
TU2278960 other downstream 532215 5257722 ~ 5259782 (-) True G1991846
TU2278677 other downstream 706311 5045006 ~ 5085686 (-) True LOC110515683
TU2278541 other downstream 938242 4849237 ~ 4853755 (-) True LOC110526851
TU2278312 other downstream 1204127 4586727 ~ 4587870 (-) False G1991436
TU2279911 other upstream 193764 5986431 ~ 5988773 (-) True G1992485
TU2280099 other upstream 604377 6397044 ~ 6410990 (-) False LOC118936596
TU2280100 other upstream 604377 6397044 ~ 6402895 (-) False LOC118936596
TU2280112 other upstream 632389 6425056 ~ 6429713 (-) False LOC118936596
TU2280111 other upstream 639208 6431875 ~ 6444229 (-) False LOC118936596

Expression Profile