RNA id: TU2282122


Basic Information

Item Value
RNA id TU2282122
length 753
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1994098
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7446801 ~ 7453901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacatgtgctcagtgtgaacctgctttcatctgtgaaccAATTCGGATGATATTGTTGATTactgctgttttttttaaactctttTCTCTCTtgtaactagctgattcatctagactacattagagatgatcagattatatatctaactagctgattcatctagactacattagaggtgatcagatggtatatctaactagctgattcatctagactacattagagatgatcagatgatatatctaactagctgattcatctagactacattagagatgatcagattatatatctaactagctgattcatctagactacattagagatgatcagatgatataactaactagctgattcatctagactacattagagATGATCAGGTGACATAACTTACCCAACCCAGGAGGGGTTGTAGCAAAGAGGTCGTTTTTTATGACTCCCTTTCATTTGTTGTTCTAGCTTGCTTAGTCATtttttttgtggttgaatccACTTAGATCATTAGCCCTGTCAACGGTCTGTGCAACCTGTGTCCTGCAGTGGAGGTCCTCCttaggggaggaccatcctactcagtgaatttcagattATAATATGTTGAagtatcctttttagataaaactgtactacatacagtgccttcagaaagtattcataccccttgacttatttcacattttgtttctgttaaagcctgaattcaaaatggattacatttatttttctctcacccatctacacacaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282079 lncRNA downstream 41333 7405203 ~ 7405468 (-) True G1994084
TU2282075 lncRNA downstream 46081 7400236 ~ 7400720 (-) True G1994082
TU2282070 lncRNA downstream 56398 7390186 ~ 7390403 (-) True G1994077
TU2282058 lncRNA downstream 80963 7365620 ~ 7365838 (-) True G1994065
TU2282050 lncRNA downstream 92314 7353159 ~ 7354487 (-) False G1994059
TU2282158 lncRNA upstream 13164 7467065 ~ 7467771 (-) True G1994111
TU2282159 lncRNA upstream 21454 7475355 ~ 7476184 (-) False G1994112
TU2282161 lncRNA upstream 21454 7475355 ~ 7477201 (-) True G1994112
TU2282162 lncRNA upstream 22392 7476293 ~ 7476708 (-) True G1994113
TU2282164 lncRNA upstream 30172 7484073 ~ 7488409 (-) True G1994115
XM_036963311.1 mRNA downstream 7198 7406157 ~ 7439603 (-) False LOC110526832
XM_036963313.1 mRNA downstream 7198 7406157 ~ 7439603 (-) True LOC110526832
XM_036963310.1 mRNA downstream 7199 7406157 ~ 7439602 (-) False LOC110526832
XM_036963312.1 mRNA downstream 7199 7406157 ~ 7439602 (-) False LOC110526832
XM_036963314.1 mRNA downstream 7199 7406157 ~ 7439602 (-) False LOC110526832
XM_036964363.1 mRNA upstream 1320 7455221 ~ 7497908 (-) False LOC118944524
XM_036964359.1 mRNA upstream 1320 7455221 ~ 7528244 (-) False LOC118944524
XM_036964360.1 mRNA upstream 1320 7455221 ~ 7528244 (-) False LOC118944524
XM_036964361.1 mRNA upstream 1320 7455221 ~ 7528244 (-) False LOC118944524
XM_036964362.1 mRNA upstream 1320 7455221 ~ 7528244 (-) True LOC118944524
TU2282068 other downstream 57233 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 1002572 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 1002572 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 1017088 6425056 ~ 6429713 (-) False LOC118936596
TU2280100 other downstream 1043906 6397044 ~ 6402895 (-) False LOC118936596
TU2282226 other upstream 197485 7651386 ~ 7665132 (-) True LOC118936603
TU2282281 other upstream 295394 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 295646 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 349943 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 417281 7871182 ~ 7873016 (-) True LOC110515105

Expression Profile