RNA id: TU2282169



Basic Information


Item Value
RNA id TU2282169
length 207
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1994119
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7501921 ~ 7502416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAACCTATTGGTGACTCAAACCTATTGGTGACTCAAACGTATTTTTGATGATGGACTCATTACGAGTAGTTGCAAGGTTACTACATTTCTAGTTAAGAAAAATCTAGTTAAAGAAACATCTGCAGGTGTGTGGTAGGGGTTTCAAATGTTACACTGGAAATAAATGGTCCTTTatccagaatatatatatatttttttaccagaGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282166 lncRNA downstream 11731 7488825 ~ 7490190 (-) True G1994117
TU2282164 lncRNA downstream 13512 7484073 ~ 7488409 (-) True G1994115
TU2282165 lncRNA downstream 16006 7484254 ~ 7485915 (-) True G1994116
TU2282161 lncRNA downstream 24720 7475355 ~ 7477201 (-) True G1994112
TU2282162 lncRNA downstream 25213 7476293 ~ 7476708 (-) True G1994113
TU2282157 lncRNA upstream 50235 7552651 ~ 7553010 (-) True G1994110
TU2282131 lncRNA upstream 50664 7553080 ~ 7646023 (-) False G1994101
TU2282135 lncRNA upstream 139757 7642173 ~ 7644222 (-) False G1994101
TU2282134 lncRNA upstream 140638 7643054 ~ 7644222 (-) True G1994101
TU2282238 lncRNA upstream 144867 7647283 ~ 7650992 (-) False LOC118936603
XM_036964363.1 mRNA downstream 4013 7455221 ~ 7497908 (-) False LOC118944524
XM_036964364.1 mRNA downstream 35301 7465120 ~ 7466620 (-) True LOC118944525
XM_036963311.1 mRNA downstream 62318 7406157 ~ 7439603 (-) False LOC110526832
XM_036963313.1 mRNA downstream 62318 7406157 ~ 7439603 (-) True LOC110526832
XM_036963322.1 mRNA downstream 62319 7406157 ~ 7439602 (-) False LOC110526832
XM_036964011.1 mRNA upstream 55595 7558011 ~ 7564844 (-) True LOC110526835
XM_036964012.1 mRNA upstream 64200 7566616 ~ 7572156 (-) True LOC110526838
XR_005039811.1 mRNA upstream 76981 7579397 ~ 7595763 (-) False LOC110526837
XM_036964013.1 mRNA upstream 77504 7579920 ~ 7595763 (-) False LOC110526837
XR_005039810.1 mRNA upstream 77504 7579920 ~ 7595763 (-) False LOC110526837
TU2282068 other downstream 112353 7389245 ~ 7389568 (-) True G1994075
TU2280111 other downstream 1057692 6431875 ~ 6444229 (-) False LOC118936596
TU2280107 other downstream 1057692 6443346 ~ 6444229 (-) True LOC118936596
TU2280112 other downstream 1072208 6425056 ~ 6429713 (-) False LOC118936596
TU2280100 other downstream 1099026 6397044 ~ 6402895 (-) False LOC118936596
TU2282226 other upstream 148970 7651386 ~ 7665132 (-) True LOC118936603
TU2282281 other upstream 246879 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other upstream 247131 7749547 ~ 7751377 (-) True LOC110526845
TU2282311 other upstream 301428 7803844 ~ 7805854 (-) True LOC118944558
TU2282298 other upstream 368766 7871182 ~ 7873016 (-) True LOC110515105

Expression Profile