RNA id: TU2282451


Basic Information

Item Value
RNA id TU2282451
length 1600
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1994302
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8008778 ~ 8038089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCAAATACTTttcgacttttactcaagtcgtattttactgggggactttcacttttacttgagtcattttctattaaagtagctttacttttactacagtatgaTGATTGAGTACCTTTTCCACCACGGCAGAAACACAGAGATAATGTGACCCTTCTCTACCACacccacagaaacacagagataagGTGATCCTTCTCTACCACacccacagaaacacagagataagGTGACCCTTCTCTACCACacccacagaaacacagagataagGCAATCCTTATCTACCACACCCATAGAAACACAGGGATAAGGTGATCCCTCTCTACCACTCCCAGAGAAAAGCATCCAAGAGAAAGTCACAGCTCAAACAAGACACCCACAGGGAGCGGGGTCACGGTCAGGGACACCATTGTCCAGCACCCATGGAGCACTGGGGTTAAGTGTTTGCTCAAAGGCACAGTGACAGATTTGCCATTTTGTCAGCTCCAGGATTGGAACCATCCCCCTTTtgggttattggcccaacgctctaacctcaaGGCTATTTGTCTTTCCCAGAGTGTTGTTTTCAATGACAGACAGGCCCAGGTTGGTGCAAGTTTCTCCACACGTCCAGAAGCTCCTGAGGAGTGTTGAGGATGGTTGTGATAACAGCCATGTAGTGACAGCGGTCCTGGGCTCCTGCATACCCCTGAAAAAGGTTTCCACTGGGGGGGTCAGTTGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGCCCCGTCGGGCCACTAGTCCAGTCTGGTAGTTCTGCTTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGCAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGGACCTCTTTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCCTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTCTGGCTCATCCAGGATGAAGGAGTACTCATGTGGGTATTGTACATGGTACGGTCCTCGGGACACGTACGGGGGAGGAGCGGCCAGAATCGCAACTGACATGTTTGCTGCTGGCTTGGTTGTTGAAGGTGAGATCCTTTCTTTGAGGTCAACTGCCAGGATGACCACAATCATCATCACGACCAGGAACAGAAACAGGCAAAGGCAGCTGTTGCGACACCAGCGTCTCTTTTTGAGCTGTGTTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282460 lncRNA downstream 11751 8014079 ~ 8014454 (-) True G1994306
TU2282435 lncRNA downstream 38072 7986927 ~ 7988133 (-) True G1994294
TU2282429 lncRNA downstream 48614 7974214 ~ 7977591 (-) False G1994289
TU2282468 lncRNA upstream 473 8028400 ~ 8030309 (-) True G1994312
TU2282480 lncRNA upstream 30560 8058487 ~ 8060137 (-) True G1994319
TU2282482 lncRNA upstream 31231 8059158 ~ 8060038 (-) True G1994320
TU2282484 lncRNA upstream 34100 8062027 ~ 8062510 (-) True G1994322
TU2282510 lncRNA upstream 91285 8119212 ~ 8120344 (-) False G1994334
XM_036964151.1 mRNA downstream 61186 7943252 ~ 7965019 (-) True LOC110519426
XM_036963594.1 mRNA downstream 88376 7926602 ~ 7937829 (-) True LOC118944417
XM_036964048.1 mRNA upstream 43102 8071029 ~ 8075936 (-) False LOC110518910
XM_036964049.1 mRNA upstream 43102 8071029 ~ 8089566 (-) False LOC110518910
XR_005039823.1 mRNA upstream 51529 8079456 ~ 8080950 (-) True LOC118944485
XM_036964047.1 mRNA upstream 57152 8085079 ~ 8089570 (-) True LOC110518910
XM_036963943.1 mRNA upstream 69047 8096974 ~ 8103779 (-) False LOC118944463
TU2282298 other downstream 153189 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 220351 7803844 ~ 7805854 (-) True LOC118944558
TU2282281 other downstream 274828 7749295 ~ 7751377 (-) False LOC110526845
TU2282282 other downstream 274828 7749547 ~ 7751377 (-) True LOC110526845
TU2282226 other downstream 361073 7651386 ~ 7665132 (-) True LOC118936603
TU2282504 other upstream 72393 8100320 ~ 8105982 (-) True LOC118944463
TU2282709 other upstream 662117 8690044 ~ 8691695 (-) False LOC110527031
TU2282717 other upstream 665477 8693404 ~ 8702825 (-) False LOC110527031
TU2282715 other upstream 677500 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 706009 8733936 ~ 8748744 (-) False LOC110527031

Expression Profile