RNA id: TU2282761



Basic Information


Item Value
RNA id TU2282761
length 254
lncRNA type intronic
GC content 0.54
exon number 3
gene id G1994517
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8698583 ~ 8700083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccttgacacaccacaccttgacacaccacaccttgacaccacaccttgacaacccacaccttgacacaccacaccttgacaacccacaccttgacaaccCACACCTTGACAACCCACACCTTGACAACCCACACCTTGACaacccacaccttgacacaccacaccttgacacaccacaccttgacacaccacaccttgacaccacaccttgacacaccacgccttgacaccacaccttgacaccacaccttgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282718 lncRNA downstream 2048 8693404 ~ 8696535 (-) False LOC110527031
TU2282757 lncRNA downstream 9916 8686490 ~ 8688667 (-) True G1994513
TU2282754 lncRNA downstream 17026 8681352 ~ 8681557 (-) True G1994512
TU2282753 lncRNA downstream 17583 8680801 ~ 8681000 (-) True G1994511
TU2282728 lncRNA downstream 17838 8680237 ~ 8680745 (-) True G1994494
TU2282768 lncRNA upstream 9725 8709808 ~ 8710294 (-) True G1994522
TU2282769 lncRNA upstream 25977 8726060 ~ 8728462 (-) True G1994523
TU2282772 lncRNA upstream 31717 8731800 ~ 8732460 (-) True G1994525
TU2282775 lncRNA upstream 34808 8734891 ~ 8735391 (-) True G1994526
TU2282783 lncRNA upstream 61473 8761556 ~ 8762170 (-) False G1994534
XR_005039909.1 mRNA downstream 120082 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 125024 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 555220 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 555221 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 555223 8129328 ~ 8143360 (-) False LOC118944505
XM_036964523.1 mRNA upstream 81576 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 81576 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA upstream 81576 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA upstream 81576 8781659 ~ 8783606 (-) True LOC118944550
XR_005039862.1 mRNA upstream 126124 8826207 ~ 8869626 (-) False LOC118936605
TU2282709 other downstream 6888 8690044 ~ 8691695 (-) False LOC110527031
TU2282504 other downstream 592601 8100320 ~ 8105982 (-) True LOC118944463
TU2282298 other downstream 825567 7871182 ~ 7873016 (-) True LOC110515105
TU2282311 other downstream 892729 7803844 ~ 7805854 (-) True LOC118944558
TU2282282 other downstream 947206 7749547 ~ 7751377 (-) True LOC110526845
TU2282715 other upstream 5344 8705427 ~ 8715137 (-) False LOC110527031
TU2282707 other upstream 33853 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other upstream 33853 8733936 ~ 8748744 (-) True LOC110527031
TU2282921 other upstream 392997 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 476955 9177038 ~ 9180705 (-) True G1994674

Expression Profile