RNA id: TU2282784



Basic Information


Item Value
RNA id TU2282784
length 341
lncRNA type intronic
GC content 0.35
exon number 2
gene id G1994534
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8761556 ~ 8762170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTCCACaactctagtagtagtaatagttagtaacattgtcctggtctataatacctccagaactctagtagtagtaatagttagtaacattgtcctggtctataataactccagaactctagtagtagtaatagttagttagtaacattgtcctggtctatattacctccagaactctagtagtagtaatagttagttagtaacattgtcctggtctataatacctccagaactctagtagtagtaatagttagtaacattgtcctggtctataatacctccagaactctagtagtagtaatagttagtaacattgtcctggtctataatacctccagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2282775 lncRNA downstream 26165 8734891 ~ 8735391 (-) True G1994526
TU2282772 lncRNA downstream 29096 8731800 ~ 8732460 (-) True G1994525
TU2282769 lncRNA downstream 33094 8726060 ~ 8728462 (-) True G1994523
TU2282768 lncRNA downstream 51262 8709808 ~ 8710294 (-) True G1994522
TU2282764 lncRNA downstream 61178 8699120 ~ 8700378 (-) True G1994518
TU2282786 lncRNA upstream 4101 8766109 ~ 8767086 (-) True G1994536
TU2282791 lncRNA upstream 29169 8791177 ~ 8791686 (-) True G1994541
TU2282808 lncRNA upstream 64472 8826480 ~ 8832243 (-) False LOC118936605
TU2282809 lncRNA upstream 64472 8826480 ~ 8830285 (-) False LOC118936605
TU2282811 lncRNA upstream 64472 8826480 ~ 8828073 (-) False LOC118936605
XR_005039909.1 mRNA downstream 183055 8575215 ~ 8578501 (-) True LOC118944553
XR_005039910.1 mRNA downstream 187997 8571729 ~ 8573559 (-) True LOC118944554
XM_036964178.1 mRNA downstream 618193 8129328 ~ 8143363 (-) False LOC118944505
XM_036964176.1 mRNA downstream 618194 8129329 ~ 8143362 (-) True LOC118944505
XM_036964177.1 mRNA downstream 618196 8129328 ~ 8143360 (-) False LOC118944505
XM_036964523.1 mRNA upstream 19651 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA upstream 19651 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA upstream 19651 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA upstream 19651 8781659 ~ 8783606 (-) True LOC118944550
XR_005039862.1 mRNA upstream 64199 8826207 ~ 8869626 (-) False LOC118936605
TU2282707 other downstream 12812 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 12812 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 46419 8705427 ~ 8715137 (-) False LOC110527031
TU2282717 other downstream 58731 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 69861 8690044 ~ 8691695 (-) False LOC110527031
TU2282921 other upstream 331072 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 415030 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 685585 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 738708 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 2160008 10922016 ~ 10924533 (-) True G1996632

Expression Profile