RNA id: TU2282826


Basic Information

Item Value
RNA id TU2282826
length 494
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1994562
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8867469 ~ 8868005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTGTTCTGTTTACATGACAGTGAATGGAGTTGACATGAGTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATGAAAGCCctgtttaaaggtagactcagcgatatgatgtAGGTTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGCTGAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCCtgttttaaaggtagactcagcgatatgatgtAGATTAAAGCCctgtttaaaggtagactcagcgacaTGATGTAGATTAAAGCCCtgttttaaaggtagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2282808 lncRNA downstream 35226 8826480 ~ 8832243 (-) False LOC118936605
TU2282815 lncRNA downstream 35226 8826480 ~ 8832243 (-) False LOC118936605
TU2282814 lncRNA downstream 35226 8828743 ~ 8832243 (-) True LOC118936605
TU2282809 lncRNA downstream 37184 8826480 ~ 8830285 (-) False LOC118936605
TU2282811 lncRNA downstream 39396 8826480 ~ 8828073 (-) False LOC118936605
TU2282827 lncRNA upstream 2650 8870655 ~ 8870930 (-) True G1994563
TU2282848 lncRNA upstream 30005 8898010 ~ 8898445 (-) True G1994574
TU2282865 lncRNA upstream 68384 8936389 ~ 8937315 (-) True G1994589
TU2282896 lncRNA upstream 140490 9008495 ~ 9010657 (-) True G1994617
TU2282895 lncRNA upstream 143493 9011498 ~ 9012001 (-) True G1994616
XM_036964527.1 mRNA downstream 61597 8564300 ~ 8805872 (-) False LOC110527031
XM_036964523.1 mRNA downstream 83863 8781659 ~ 8783606 (-) False LOC118944550
XM_036964524.1 mRNA downstream 83863 8781659 ~ 8783606 (-) False LOC118944550
XM_036964525.1 mRNA downstream 83863 8781659 ~ 8783606 (-) False LOC118944550
XM_036964526.1 mRNA downstream 83863 8781659 ~ 8783606 (-) True LOC118944550
XM_036964333.1 mRNA upstream 39926 8907931 ~ 8959715 (-) True LOC110499813
XM_036963694.1 mRNA upstream 157773 9025778 ~ 9036386 (-) False LOC110500985
XM_036963696.1 mRNA upstream 157773 9025778 ~ 9036386 (-) False LOC110500985
XM_036963697.1 mRNA upstream 157773 9025778 ~ 9036386 (-) False LOC110500985
XR_005039719.1 mRNA upstream 157773 9025778 ~ 9036386 (-) False LOC110500985
TU2282707 other downstream 118725 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 118725 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 152332 8705427 ~ 8715137 (-) False LOC110527031
TU2282717 other downstream 164644 8693404 ~ 8702825 (-) False LOC110527031
TU2282709 other downstream 175774 8690044 ~ 8691695 (-) False LOC110527031
TU2282921 other upstream 225075 9093080 ~ 9108159 (-) True LOC110516734
TU2282985 other upstream 309033 9177038 ~ 9180705 (-) True G1994674
TU2283141 other upstream 579588 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 632711 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 2054011 10922016 ~ 10924533 (-) True G1996632

Expression Profile