RNA id: TU2283019


Basic Information

Item Value
RNA id TU2283019
length 398
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1994697
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9231181 ~ 9232461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcatttttattgtttatttcacttttgtttattatctacttcacttgctttgacaatgttaactaacatatgtttccaatgccaataaagcccttaaatttaattgaattgaattcagagagagagagagatacagagagagagagatgggtcaaCCATactgtatggagggagaagagttACATTCCTATGGTACGTCCCCCTGGACAAGTGAACTAGCTAactaaacaataataataaacctTCCCATAATAAACCccataataaaccttcccataataaaccttcccataataaaccttcccataataaaccttcccataataaaccttcccataataaaccccataataaaccccataataaaccttcccataataaaccccataatAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2283010 lncRNA downstream 12841 9216971 ~ 9218791 (-) True G1994690
TU2283008 lncRNA downstream 16027 9214703 ~ 9215605 (-) False G1994688
TU2283006 lncRNA downstream 16027 9214954 ~ 9215605 (-) True G1994688
TU2282989 lncRNA downstream 40341 9190216 ~ 9191291 (-) True G1994677
TU2282986 lncRNA downstream 47653 9182486 ~ 9183979 (-) True G1994675
TU2282993 lncRNA upstream 486 9232947 ~ 9234808 (-) True G1994679
TU2282992 lncRNA upstream 2510 9234971 ~ 9240964 (-) False G1994678
TU2282991 lncRNA upstream 8155 9240616 ~ 9241675 (-) True G1994678
TU2283032 lncRNA upstream 28218 9260679 ~ 9263614 (-) False otud7a
TU2283033 lncRNA upstream 28218 9260679 ~ 9263614 (-) False otud7a
XM_036963698.1 mRNA downstream 123383 9090166 ~ 9108249 (-) False LOC110516734
XM_036964555.1 mRNA downstream 158290 9043417 ~ 9073342 (-) True LOC118944560
XR_005039724.1 mRNA downstream 195246 9025778 ~ 9036386 (-) False LOC110500985
XM_036963345.1 mRNA upstream 26515 9258976 ~ 9384991 (-) False otud7a
XM_036963346.1 mRNA upstream 26515 9258976 ~ 9384991 (-) False otud7a
NM_001124366.1 mRNA upstream 159500 9391961 ~ 9394414 (-) True gtf2a2
XM_021585689.2 mRNA upstream 888589 10121050 ~ 10126999 (-) True LOC110506256
XM_021585688.2 mRNA upstream 934648 10167109 ~ 10184048 (-) False fhl5
TU2282985 other downstream 50927 9177038 ~ 9180705 (-) True G1994674
TU2282921 other downstream 123473 9093080 ~ 9108159 (-) True LOC110516734
TU2282707 other downstream 482888 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 482888 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 516495 8705427 ~ 8715137 (-) False LOC110527031
TU2283141 other upstream 215132 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 268255 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 1689555 10922016 ~ 10924533 (-) True G1996632
TU2285507 other upstream 2185638 11418099 ~ 11418335 (-) True G1996949
TU2288512 other upstream 4104874 13337335 ~ 13338151 (-) True G1999856

Expression Profile