RNA id: TU2282993


Basic Information

Item Value
RNA id TU2282993
length 1658
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1994679
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9232947 ~ 9234808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtagccaggTGAATCATGATGATGATAGTAATAAGATCAGGGGTGTGTGGCCGAACCCCAAACCACGTGCAGGGTATTGTTCCAGCCCTGCAGTAACACTGGCCTAAAGTGTTTAGGTGACTGACGTCTCTGCTCTCATCATGGGAACTAAACACCTCTCCCGTGGATGAGGTTATGAAGCAACGCAGCAGAGACGTCTCTGCTCTCATCTTCACATCCCCTTTTTTGAATCAGTCTGACGTGTTGACCGACACAGCTCACTGCCACACTGTGGTTCACTgatgatctctctgtctctctctctgtctctctctctctctgtctctcactgtggCTGTGGTTCgctgatgatctctctgtctctccctctccctctctctctctctgtctctctctctctctctctctctctccccctctagttTCCACTGGTTATTTTGTGTCATCACCATTCAAAGATAAGACATAGTCTGAAGGACTACTTCCATGGTTTCTTTCAGtgtgaaaaacaaaaaacagaattaATTCAAGGAGAGGAGTGCAATTCTGTTTGAGTGTAAAggctattttgtgtgtgtgtgtgtgtgtgtgtgtctctgcgtgtcTTCATTGTGTCCATTCTTTCAAGCTATGAAAAGAGGCCTTCCCTGAGCAGGGCAGAAGATTCAACCTGCATTGAATTTCAGAGTAAAGTGATGTTTTCTATTTGTGCAgtcaagttttaaaaaaaaaattaaaaaaataaatgaaactgtgtgttttttttataatcCTGAGGATGAAGATGGAAATCTCTCCTTTCGTCAATTTCAAATAAATGTAACTTCCTGTAGTATTTACAATACGGAATATCTCGTTCTGTGTTCTTTCTTGGCTGATTCTGCTAACTGTAAGTATCACAACCTAAATGACACAATATTAAACAATGGGGGACAATGAGGCTTCTCAAAGAGACAACACGGTACATTTGTATACTAATGGAAATATTGTAATCAGAAAGAcattcttttttgttgttgtctttgcTGTCGAAAGGATTGATCTCCAATAGGCAGTATAGTACATGATGTAGAAGACAGTACAATGCAGCAAGCATACAAAGCATTGGaaatgaggagggggggggggggtcccaatTAGGACCAGAGCCAATCAGAAGAAccctactgaacaaaaataacgAATCAGAGTAGCTGCTGGGGTTGTGGCGTAGTCCCATTGAAGTCAAGGTTAGGGTGAGACGTTAGAACAAGGGACGAGGCATCAAGTTCTTTGAAAGGATTCCTTCTACCACCACCTGTCATGGTAAAAAAAAAGACTGCAGCGTGACTGGAGTGGATCCTCTAGAGGATCCAGTCTAACACCACcatcatgatttaaaaaaaaaaaaaaaaattgaaatagcCTATTTCCATTGCAATGCTGTTGTGGGCTGTGACATTCCACAGGGCACCGGTGTAGAAACCCAAACCCTGTGGTGGAAAAGACCTAAAACAGACTGAAAGAGTGCTGtcctgtctgtgggtgtgtgtcttgTCTAGTGGGTGGGTGGGTCAATCAGGGCGTTGGAGGCAGAGCCTGAAAGTGCTGTTTGGCGGGGCTTTAAGGCGAGTTAGCTGGGCTGAGGGTGGGGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2283020 lncRNA downstream 486 9231181 ~ 9232461 (-) False G1994697
TU2283019 lncRNA downstream 486 9231632 ~ 9232461 (-) True G1994697
TU2283010 lncRNA downstream 14156 9216971 ~ 9218791 (-) True G1994690
TU2283008 lncRNA downstream 17342 9214703 ~ 9215605 (-) False G1994688
TU2283006 lncRNA downstream 17342 9214954 ~ 9215605 (-) True G1994688
TU2282992 lncRNA upstream 163 9234971 ~ 9240964 (-) False G1994678
TU2282991 lncRNA upstream 5808 9240616 ~ 9241675 (-) True G1994678
TU2283032 lncRNA upstream 25871 9260679 ~ 9263614 (-) False otud7a
TU2283033 lncRNA upstream 25871 9260679 ~ 9263614 (-) False otud7a
TU2283034 lncRNA upstream 25871 9260679 ~ 9263614 (-) True otud7a
XM_036963698.1 mRNA downstream 124698 9090166 ~ 9108249 (-) False LOC110516734
XM_036964555.1 mRNA downstream 159605 9043417 ~ 9073342 (-) True LOC118944560
XR_005039724.1 mRNA downstream 196561 9025778 ~ 9036386 (-) False LOC110500985
XM_036963345.1 mRNA upstream 24168 9258976 ~ 9384991 (-) False otud7a
XM_036963346.1 mRNA upstream 24168 9258976 ~ 9384991 (-) False otud7a
NM_001124366.1 mRNA upstream 157153 9391961 ~ 9394414 (-) True gtf2a2
XM_021585689.2 mRNA upstream 886242 10121050 ~ 10126999 (-) True LOC110506256
XM_021585688.2 mRNA upstream 932301 10167109 ~ 10184048 (-) False fhl5
TU2282985 other downstream 52242 9177038 ~ 9180705 (-) True G1994674
TU2282921 other downstream 124788 9093080 ~ 9108159 (-) True LOC110516734
TU2282707 other downstream 484203 8733936 ~ 8748744 (-) False LOC110527031
TU2282708 other downstream 484203 8733936 ~ 8748744 (-) True LOC110527031
TU2282715 other downstream 517810 8705427 ~ 8715137 (-) False LOC110527031
TU2283141 other upstream 212785 9447593 ~ 9448494 (-) True G1994786
TU2283174 other upstream 265908 9500716 ~ 9501653 (-) True G1994812
TU2285182 other upstream 1687208 10922016 ~ 10924533 (-) True G1996632
TU2285507 other upstream 2183291 11418099 ~ 11418335 (-) True G1996949
TU2288512 other upstream 4102527 13337335 ~ 13338151 (-) True G1999856

Expression Profile