RNA id: TU2285713


Basic Information

Item Value
RNA id TU2285713
length 1103
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1997147
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 11530993 ~ 11536751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaattttgctttgaacGTTAATAAACTtataaactcacttttgagaaaatggcctttgaatattttggtatctagtgaagagctcttctttgtctacacccattcagcataaTTTACATCCTCTTAAAGCTTTAGTCCCACCCATCTTGTTTTGGTCTCAGAGCATTCAGAGCGAACACTTGACACTCTGGCTGATGATATGTTTACCTTTATTGcagacatttactgacaccggcagTATTCAACGGAtgttgtacactttagcttaagacatgtagctagcaagctaagtAAACAGCGTGTATGATCACACACGTCACATAAGGTTAGCTAACGAGTAAGCCAGCTAATGTttgctagttaaacaacaatgaacaaagtgccaaatcatgtcgttactaccctgcatgaatatgCTGAAAGCTAACAAACCAGgttcaatattagctagctaacattaggctctaactagaaaagcaaacggCTCTGGAATATGAATAAGGGagccagctaactaacagtacactttagcttgaaattaaaccactttGTCAAAATTTGAAACgtttaatatctgaaaatgtatacatcatcatgcatACCATGGTTGCCCTGAGTTTGAAGATGTattccggagacaggtgttttctccatctctttatcatactccaattccactgatttcaaatctTGATCCTTCAGAAAGTTGAGAggaactgttacggtgcgtgaatgaggacccaaaagcgaattaacttaaacagagcttctttaattaccaaacataggtaggctcagacggaccggcagattccgacaggacaagacaaggttacagcaaacatgacgacagtctggttcaggcatgaaacacaacaaacaagaatccgacaaagacaggaacaaaaacagagagagatatagaggactaatcagagggaaaaagggaacaggtgggaaaaggggtgacgaggtagttaggaggagacaaggcacagctgggggaaagagggggagaaaaggtaacctaacaacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2285645 lncRNA downstream 3071 11447956 ~ 11527922 (-) True G1997082
TU2285538 lncRNA downstream 88405 11442385 ~ 11442588 (-) True G1996980
TU2285413 lncRNA downstream 114157 11294684 ~ 11416836 (-) True G1996858
TU2285459 lncRNA downstream 114880 11349092 ~ 11416113 (-) True G1996901
TU2285365 lncRNA downstream 331524 11198918 ~ 11199469 (-) True G1996810
TU2285799 lncRNA upstream 77552 11614303 ~ 11614550 (-) True G1997232
TU2285808 lncRNA upstream 84045 11620796 ~ 11621034 (-) True G1997241
TU2285814 lncRNA upstream 86782 11623533 ~ 11623756 (-) True G1997247
TU2285860 lncRNA upstream 107512 11644263 ~ 11653638 (-) True G1997291
TU2287619 lncRNA upstream 455194 11991945 ~ 11992317 (-) True G1999008
XR_005039835.1 mRNA downstream 205311 11323168 ~ 11325682 (-) True LOC118944497
XM_021585665.2 mRNA downstream 229576 11251835 ~ 11301417 (-) False mocs1
XM_021585690.2 mRNA upstream 501381 12038132 ~ 12419690 (-) True LOC110506257
XM_021585691.2 mRNA upstream 1033446 12570197 ~ 12616544 (-) False LOC110506258
XM_021585692.2 mRNA upstream 1033446 12570197 ~ 12616546 (-) False LOC110506258
XR_005039673.1 mRNA upstream 1066414 12603165 ~ 12616568 (-) False LOC110506258
XM_021585694.2 mRNA upstream 1138813 12675564 ~ 12687535 (-) False LOC110506259
TU2285507 other downstream 112658 11418099 ~ 11418335 (-) True G1996949
TU2285182 other downstream 606460 10922016 ~ 10924533 (-) True G1996632
TU2283174 other downstream 2029340 9500716 ~ 9501653 (-) True G1994812
TU2283141 other downstream 2082499 9447593 ~ 9448494 (-) True G1994786
TU2282985 other downstream 2350288 9177038 ~ 9180705 (-) True G1994674
TU2288512 other upstream 1800584 13337335 ~ 13338151 (-) True G1999856
TU2288641 other upstream 1983935 13520686 ~ 13521520 (-) True G1999980
TU2288713 other upstream 2093033 13629784 ~ 13630075 (-) True G2000052
TU2289555 other upstream 2741390 14278141 ~ 14278746 (-) True G2000879
TU2290186 other upstream 3096251 14633002 ~ 14633608 (-) True LOC110506276

Expression Profile