RNA id: TU2288641


Basic Information

Item Value
RNA id TU2288641
length 835
RNA type TUCP
GC content 0.46
exon number 1
gene id G1999980
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 13520686 ~ 13521520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCAAGTAAGCAGCACAGTAATCGTCACAGTCCTGGAGGACCTTGTCCATCAGCCTCTGGAAAGTCGCAGGGGCCCCACGAAGGCCAAACGGCATGACCGTGAACTGGAACAGGCCCATTGGCGTCCGGAATGCAGTGTAGGCCTTGGATTGTTCATCCAGGGGCACCTGCCAGTACCCTTTGCAGAGATCCAATGTAGTGATGTAATGAGCTCTACCTATTCTCTCCAGTAAGTCGTCAATGCGGGGCATGGGATAGGCATCAAACTGGGAGATGGCATTCACCTTACGGAAGTCCATGCAGACGCGCAAAGAGCCATCCTTCTTTGGGACAATGACAATAGGGCTGCTCCATTCACTTGAAGATGGCTCGACAACATCcatctctatcatggtgtggacCTCTTCCTTGAGGGCTACCACCAGCCTCTCAGGCACACGGTAAGGATGCTGGCGGACAGGGTTCTGGCCAGGTTTCAAACGAATGACGTGTTCCAGGACTTTGGTTCTTCCTGGTGGAGGAGTGggtcaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaccaaatattaagttctgcttttctgatttatcaaatacttatgtcatgtaataaaatgcaaattaattacttaaaaatcatacaatgtgattttctatatttttgttttagattccatctctcacagttgaagtgtacctctacatgctttgtaagtaggaaaacctgcaaaatcggcagtgtttgaaatacttgttctccccaatgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2288635 lncRNA downstream 8196 13512025 ~ 13512490 (-) True G1999974
TU2288623 lncRNA downstream 9486 13491607 ~ 13511200 (-) True G1999962
TU2288514 lncRNA downstream 179905 13340296 ~ 13340781 (-) True G1999858
TU2288508 lncRNA downstream 188495 13331919 ~ 13332191 (-) True G1999852
TU2288498 lncRNA downstream 207978 13312487 ~ 13312708 (-) True G1999842
TU2288642 lncRNA upstream 578 13522098 ~ 13523022 (-) True G1999981
TU2288685 lncRNA upstream 61703 13583223 ~ 13584752 (-) True G2000024
TU2288702 lncRNA upstream 93960 13615480 ~ 13615686 (-) True G2000041
TU2288703 lncRNA upstream 97119 13618639 ~ 13618874 (-) True G2000042
TU2288710 lncRNA upstream 105507 13627027 ~ 13627379 (-) True G2000049
XM_021585702.2 mRNA downstream 664022 12845479 ~ 12856664 (-) True trmt61b
XR_002470940.2 mRNA downstream 685397 12786908 ~ 12835289 (-) True LOC110506264
XM_021585697.2 mRNA downstream 685403 12776493 ~ 12835283 (-) False LOC110506264
XM_036964283.1 mRNA upstream 796784 14318304 ~ 14367960 (-) False LOC110506271
XM_036964284.1 mRNA upstream 796784 14318304 ~ 14367960 (-) False LOC110506271
XM_036964282.1 mRNA upstream 796784 14318304 ~ 14368872 (-) False LOC110506271
XM_036964285.1 mRNA upstream 798687 14320207 ~ 14368873 (-) False LOC110506271
LOC110506081 mRNA upstream 855898 14377418 ~ 14496552 (-) True LOC110506081
TU2288512 other downstream 182535 13337335 ~ 13338151 (-) True G1999856
TU2285507 other downstream 2102351 11418099 ~ 11418335 (-) True G1996949
TU2285182 other downstream 2596153 10922016 ~ 10924533 (-) True G1996632
TU2283174 other downstream 4019033 9500716 ~ 9501653 (-) True G1994812
TU2283141 other downstream 4072192 9447593 ~ 9448494 (-) True G1994786
TU2288713 other upstream 108264 13629784 ~ 13630075 (-) True G2000052
TU2289555 other upstream 756621 14278141 ~ 14278746 (-) True G2000879
TU2290186 other upstream 1111482 14633002 ~ 14633608 (-) True LOC110506276
TU2292087 other upstream 2194028 15715548 ~ 15718308 (-) True G2003219
TU2292183 other upstream 2434107 15955627 ~ 15959565 (-) False nav2a

Expression Profile