RNA id: TU2296891


Basic Information

Item Value
RNA id TU2296891
length 1832
lncRNA type read_through
GC content 0.39
exon number 3
gene id G2007683
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 19821866 ~ 19857787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTATATTTAATCATCTCTCAAAATGGATCTCAAAAGTATTTATtgtacaaaacagaaataaaaaaTGCAAATCTGGAATTATGAAAAAAATTATGCATATCCAAAACAAGGAAAAACAGGGGTTAACAGCCTTATTTCAGTTAGAAacgacagttgaagtcggaagtttacatacacttagtatgcattgcctttaaattgttaattttagcccattcctcctgacagagctggtgtaacggagtcaggtttgtaggcctccttgctcgcacacactttttcagttctgcccacacattttctataggattgaggtcagggctttgtgttggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccatgctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacatcattttcttccacaaaatagatggcatcatgaggaagtgcACCAgtttctcctgcagcaaagcacccccacaacatgatgctgccaacccccaTGCTtctcggttgggatggtgttcttcggcttgtaagcctccccctttttcctctaaacataacaatggtcattatggccaaacagttctattttcagtttcatcggaccagaggacatttccccaaaaagtatgatctttgtccccacgtgcagttgcaaaccgtagtctggcttttttatggcggttttggagcagtggtttctaccttgctgagcagcctttaaggttatgtcgatataggacccgttttactgtggctatagatacttctgtaccggtttcctccagcatcttcacatggtcctttgctgttgttctgggattgattttcacttttcgcactgAAGTACTTTCATCTCAAGGAGACCGAACCCATCTCCTTCcggagtggtatgacggctgtgtggtcccatggtgtttatacttgtgtactattgtttgtacagatgaacgtggtaccttcaggtatttggatgaaccagacttgtggaggtctacaatttttgtttctgaggtcttggctgatttctttagattttcccatgatgtcaagcaaagaggcaatgagtttgaaggtaggccttgaaatacatcgacaggtacacctccaattgactcaaattaggtcaattagcctatcagaagcttcaaagccatgacatagttttctggaattttccaagctgtttaaagacggtaaacttagtgtatgtaatttcactggaattgtgatacagtgcattataagtgaaataatctaatccaacaattgttggaaaaattacttgtgtcgtgcacaaagtagatgtcctaaccgacttgccaaaaatatagtttgttaacaagaaatgtgtggagtggttgaaaaatgagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtcgtTTCTAACTGAAATAAGGCTGTTAACCCCTGTTTTTCCTTGTTTTGGATATGCATAATTTTTTTCATAATTCCAGATTTGCAttttttatttctgttttgtacaATAAATACTTTTGAGATCCATTTTGAGAGATGATTAAATATAATTTGTCTGtaaacgcataAATGGTCTCTGAAGATGTATCCAGAGATTCAGTTTCATGCGATATGAATTTAATTTAATGATTGTACTTGTGGAAACTACTGAATCTAATGTTTTGCCATTTACCCAAACATCAGAAACTACAATGACACAGTTCAACAATAAACAGTCTACCATCTAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2296887 lncRNA downstream 9383 19811646 ~ 19812483 (-) True G2007679
TU2296894 lncRNA downstream 35053 19782948 ~ 19786813 (-) True G2007686
TU2296926 lncRNA downstream 51387 19769376 ~ 19770479 (-) True G2007717
TU2296911 lncRNA downstream 84070 19736969 ~ 19737796 (-) True G2007702
TU2296875 lncRNA downstream 109372 19712162 ~ 19712494 (-) True G2007670
TU2296974 lncRNA upstream 16749 19874536 ~ 19874852 (-) True G2007763
TU2296975 lncRNA upstream 17946 19875733 ~ 19876017 (-) True G2007764
TU2296976 lncRNA upstream 18965 19876752 ~ 19877290 (-) True G2007765
TU2296981 lncRNA upstream 24437 19882224 ~ 19883187 (-) True G2007770
TU2296979 lncRNA upstream 30208 19887995 ~ 19888366 (-) True G2007768
XM_021585926.2 mRNA downstream 272 19818632 ~ 19821594 (-) True cdca9
XM_021585927.2 mRNA downstream 288 19818632 ~ 19821578 (-) False cdca9
XM_036963410.1 mRNA downstream 150270 19611688 ~ 19671596 (-) False phkb
XM_021585931.2 mRNA upstream 30907 19888694 ~ 19891953 (-) False orc6
XM_021585934.2 mRNA upstream 30907 19888694 ~ 19891957 (-) False orc6
XM_021585932.2 mRNA upstream 30907 19888694 ~ 19892061 (-) True orc6
XM_021585938.2 mRNA upstream 50591 19908378 ~ 19910488 (-) False hrh3
XM_036963417.1 mRNA upstream 50591 19908378 ~ 19910488 (-) True hrh3
TU2294697 other downstream 1587330 18234274 ~ 18234536 (-) True G2005584
TU2294564 other downstream 1622277 18194110 ~ 18199589 (-) False G2005456
TU2294243 other downstream 1931785 17887445 ~ 17890081 (-) False G2005166
TU2292784 other downstream 3098184 16720991 ~ 16723682 (-) True G2003819
TU2292186 other downstream 3862336 15955627 ~ 15959530 (-) True nav2a
TU2299347 other upstream 1776492 21634279 ~ 21634592 (-) True G2009991
TU2300664 other upstream 2545231 22403018 ~ 22405487 (-) True lto1
TU2301216 other upstream 3387997 23245784 ~ 23247139 (-) True G2011712
TU2302351 other upstream 4348493 24206280 ~ 24222078 (-) True G2012712
TU2302803 other upstream 4638526 24496313 ~ 24496808 (-) True LOC110506455

Expression Profile