RNA id: TU2299347



Basic Information


Item Value
RNA id TU2299347
length 314
RNA type TUCP
GC content 0.50
exon number 1
gene id G2009991
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 21634279 ~ 21634592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTTAGAGGCAAGTAATACtggaacatgcatgagagcaccagctgctcCGGATGactatgtgatcacgctctccgcagccgatgtgagtaagacctttaaacaagtcaatattcacaaggccgcagggccagatggattaccaggacgtgtactcagagcatgcgctgaccaactggcaattgtcttcactgacatttccaacctctccctgtctgagtcagtaataccaacatgtttcaagcagactaccatagtccctgtgcccaagaacacgaaggtaacctgcctaaatgactaccggccagtagcactc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2299345 lncRNA downstream 1046 21633008 ~ 21633233 (-) True G2009989
TU2299333 lncRNA downstream 19413 21614659 ~ 21614866 (-) True G2009977
TU2299331 lncRNA downstream 20856 21612999 ~ 21613423 (-) True G2009975
TU2299206 lncRNA downstream 232873 21400721 ~ 21401406 (-) True G2009855
TU2299166 lncRNA downstream 258831 21371717 ~ 21375448 (-) True G2009815
TU2299366 lncRNA upstream 25922 21660514 ~ 21660736 (-) True G2010010
TU2299314 lncRNA upstream 48985 21683577 ~ 21684105 (-) True G2009958
TU2299307 lncRNA upstream 53063 21687655 ~ 21688681 (-) True G2009953
TU2299439 lncRNA upstream 133597 21768189 ~ 21768417 (-) True G2010078
TU2299440 lncRNA upstream 134313 21768905 ~ 21769127 (-) True G2010079
XM_036963347.1 mRNA downstream 37663 21376435 ~ 21596616 (-) True si:ch211-186j3.6
XR_005039803.1 mRNA downstream 430582 21201512 ~ 21203697 (-) True LOC118944467
XM_021585957.2 mRNA downstream 600569 20995259 ~ 21033710 (-) True LOC110506379
XM_021585943.2 mRNA downstream 1141039 20489949 ~ 20493240 (-) True zgc:162297
XM_036963522.1 mRNA downstream 1141535 20489949 ~ 20492744 (-) False zgc:162297
XR_005039786.1 mRNA upstream 49794 21684386 ~ 21686159 (-) True LOC118944445
XM_021585968.2 mRNA upstream 56856 21691448 ~ 21759635 (-) False mtss1lb
XM_021585969.2 mRNA upstream 58172 21692764 ~ 21759635 (-) False mtss1lb
XM_021585971.2 mRNA upstream 58172 21692764 ~ 21759635 (-) False mtss1lb
XM_021585972.2 mRNA upstream 58172 21692764 ~ 21759635 (-) False mtss1lb
TU2294697 other downstream 3399743 18234274 ~ 18234536 (-) True G2005584
TU2294564 other downstream 3434690 18194110 ~ 18199589 (-) False G2005456
TU2294243 other downstream 3744198 17887445 ~ 17890081 (-) False G2005166
TU2292784 other downstream 4910597 16720991 ~ 16723682 (-) True G2003819
TU2292183 other downstream 5674714 15955627 ~ 15959565 (-) False nav2a
TU2300664 other upstream 768426 22403018 ~ 22405487 (-) True lto1
TU2301216 other upstream 1611192 23245784 ~ 23247139 (-) True G2011712
TU2302351 other upstream 2571688 24206280 ~ 24222078 (-) True G2012712
TU2302803 other upstream 2861721 24496313 ~ 24496808 (-) True LOC110506455
TU2303152 other upstream 3215678 24850270 ~ 24850636 (-) True G2013483

Expression Profile