RNA id: TCONS_00005150


Basic Information

Item Value
RNA id TCONS_00005150
length 371
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_002782
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24959246 ~ 24961310 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTACTTCATTTCTTCAGAGAAGAAGAACTGGTCTGAGAGCAGAAGATACTGTAGAGACAGAGGACCAGATCTCATCATCATAAACAACAAAGAAGAACAAgaaTATTTTAATGCAATATCTGGTGGCACTGCGTTTTGGATTGGTCTGACTGACAGTGATGAAGAGGGCAGTTGGAAATGGGTTGATGGCAGCAACATGACCACTGGAGCCCAATGGACAAAGAGGAGAGAAAGAACTGTGCTGTATCTTATTCTTCAGGATGGGTCGATTATCCATGTAATGACTATTTTCAGTGGATCTGTGAGAAAAGAGCACTTAAAAAAGTCATTAAGTTGTATTTTTGTTCATGCTGTAAATTACATGCAACAT

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-206 No description available

Ensembl:

ensembl_id ENSDART00000037303

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006048 lncRNA downstream 106721 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005759 lncRNA downstream 123911 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00005145 lncRNA downstream 199672 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00006047 lncRNA downstream 331808 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005132 lncRNA downstream 513254 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00005760 lncRNA upstream 368272 25329582 ~ 25334232 (-) False XLOC_002787
TCONS_00006049 lncRNA upstream 368272 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005761 lncRNA upstream 368273 25329583 ~ 25330449 (-) False XLOC_002787
TCONS_00005762 lncRNA upstream 369289 25330599 ~ 25336184 (-) True XLOC_002787
TCONS_00006050 lncRNA upstream 419688 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00005149 mRNA downstream 22176 24935765 ~ 24937070 (-) True XLOC_002781
TCONS_00005148 mRNA downstream 90665 24865535 ~ 24868581 (-) True XLOC_002780
TCONS_00005147 mRNA downstream 174800 24778289 ~ 24784446 (-) True XLOC_002778
TCONS_00005146 mRNA downstream 193258 24762216 ~ 24765988 (-) True XLOC_002777
TCONS_00005144 mRNA downstream 199630 24725259 ~ 24759616 (-) False XLOC_002776
TCONS_00005151 mRNA upstream 10163 24971473 ~ 25028527 (-) True XLOC_002783
TCONS_00005152 mRNA upstream 74149 25035459 ~ 25069155 (-) False XLOC_002784
TCONS_00005153 mRNA upstream 74153 25035463 ~ 25069207 (-) True XLOC_002784
TCONS_00005154 mRNA upstream 147543 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005155 mRNA upstream 252960 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005133 other downstream 503514 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 575865 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 579470 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2127817 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2206898 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005164 other upstream 532863 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 1171159 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 1234974 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1782286 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 2044961 27006271 ~ 27009124 (-) False XLOC_002814

Expression Profile

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