RNA id: TCONS_00005760


Basic Information

Item Value
RNA id TCONS_00005760
length 852
lncRNA type sense_over
GC content 0.48
exon number 6
gene id XLOC_002787
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25312337 ~ 25343521 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAGAAGACGGTGCCATCTCTACTTTAGTCATTCGCGGGTCCACAGATAACCTAATGGATGACATTGAGCGTGCCATTGATGATGGAGTGAACACTTTCAAAGTCCTTGTCAGGGATGCACGTCTTTGTCCAGGTGCTGGTGCCACTGAAATTGAGCTGGCGAAGCACATCACCTCGTATGGAGAATCTTGCCCAGGCCTGGAGCAGTACGCCATCAAGAAGTACGCAGAGGCATTTGAAGCACTGCCCCGTGCGCTGGCAGAAAACTCTGGTGTGAAGGGCAACGAGCTGATCTCCAAATTGTACGCCACACATCACGAGGGCAACAAGAACTCAGGCTTTGACATTGAGGGAGAGGGTCCTGCAGTGAGAGACATGATGGAGGCAGGCATCCTCGATCCATACCTAGTCAAGTACTGGGGCATCAAACTGGCCACAAACGCAGCCATCACTGTCCTCCGTGTGGATCAGATCATTATGGCAAAGCCAGCAGGGGGACCCAAAGCCCCTAAACAGCAAGGACACTGGGACAAGGACGGCTGGGATGATGAACCAGATAAATTTGATGCACATCATTAATAAGAAATCCTAAATAATAGCAAAGATAATAATGGCCAAGCCGGCTGGTGGACCCAAAGCTCCACAAGGAAAGAAGGACTGGGATGAGGATGAATGATGACATTAGGCTGTTTTGTTTCCCTGTCACCGTCTTAGCTTTTCAAGTGTTGTGTATTTAATATCTGCCCCccattctctctttttttttttgtatttttttaggaGTCGCCATGTACATTAACTGAGTGGCTACGAGCTGTATTCTGGTCCCAATAAAGGCACTTGAGCTGTCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006048 lncRNA downstream 477057 24834374 ~ 24852525 (-) True XLOC_002779
TCONS_00005759 lncRNA downstream 494247 24833696 ~ 24835335 (-) False XLOC_002779
TCONS_00005145 lncRNA downstream 570008 24752684 ~ 24759574 (-) True XLOC_002776
TCONS_00006047 lncRNA downstream 702144 24613973 ~ 24627438 (-) True XLOC_002772
TCONS_00005132 lncRNA downstream 883590 24439620 ~ 24445992 (-) True XLOC_002770
TCONS_00006050 lncRNA upstream 46766 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00006051 lncRNA upstream 68660 25402892 ~ 25405813 (-) False XLOC_002789
TCONS_00005161 lncRNA upstream 68660 25402892 ~ 25410512 (-) False XLOC_002789
TCONS_00005162 lncRNA upstream 68660 25402892 ~ 25410530 (-) False XLOC_002789
TCONS_00006052 lncRNA upstream 159941 25494173 ~ 25495284 (-) False XLOC_002790
TCONS_00005156 mRNA downstream 768 25312337 ~ 25328814 (-) False XLOC_002787
TCONS_00005155 mRNA downstream 112235 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005154 mRNA downstream 125548 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005153 mRNA downstream 260375 25035463 ~ 25069207 (-) True XLOC_002784
TCONS_00005152 mRNA downstream 260427 25035459 ~ 25069155 (-) False XLOC_002784
TCONS_00005159 mRNA upstream 68231 25402463 ~ 25543227 (-) False XLOC_002789
TCONS_00005160 mRNA upstream 68791 25403023 ~ 25561751 (-) False XLOC_002789
TCONS_00005163 mRNA upstream 129988 25464220 ~ 25570647 (-) False XLOC_002789
TCONS_00005166 mRNA upstream 238140 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA upstream 238537 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005133 other downstream 873850 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 946201 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 949806 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2498153 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2577234 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005164 other upstream 159941 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 798237 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 862052 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1409364 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1672039 27006271 ~ 27009124 (-) False XLOC_002814

Expression Profile

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