RNA id: TU2323051


Basic Information

Item Value
RNA id TU2323051
length 3382
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G2030982
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41974255 ~ 41977636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtttatatttttgtttggtatacatgACAATGGTACATGAGACAACACATTTTTATCAGAACATTCTGTTTCATTGAACAGGCCCCTGTTGCACGAGGCATCTGGCAGTTGTTGCCCCAATGACATTACTGGGCTGTATGACACCATTAACAAAATGCTAGTGCTCACGTCACTGACCTACTGGGGGATGGGAAATACTGTCAACGTAAAAAGGGGTGAGGATGCACCCCTGTAGACCCAATCAGTCAATAACCCACCGCTCGCTGCCACCAACATACCAATTCAAATCACAATTTAGATGACATTTTTATGAATATATGATTTGAGCCATGTTATCTAGACAAAAGCATTGTCAATGTAAACCATATTGTTATCTGCTGGTAAAGGGTTGCTATGTACTGCAAGTACAATCCACCATACTGTCTTTTGGTTGCTGTGGAATCGTTGTGTACCGTCCAGATGCTCACAAATATAAAACAGGAAAAGCCTGGTTATATGAAAAGGCCAGTCATTCCTCAGACAGCCATGTACTCACATGCCATGCAAGTCAAATCCACACAGAGGGAGAAATATCATTTCACAGGACATTTTATTCAGAACATCATTGAGAGAAATAAAGCTGCATTTGTAGAAACCATAGAGCCATTGAGCCGATTACCCCACACAGCAAATAGCATAGAAATTAAAGCAGAGTGCGTTTTCTCAGCTGAATCTTTTAAGTTAAAAGGCTGAAATCACTGAGAGCTCCAAAAGCATTTAAGTGCATTTTTCATTCGTAAAGCCTTCATGAAGAGTTTAGAAGTGCATAGCAGCTAAACAGGGAATTCTTCATTATGCTATTTCATTTTATCTACTCACTTTCCATCTCCTTCAAAAAGTTGACTCAAAATGAATCACACTTTCCAAACCAAACAGATATAGCATTTCAGTGTAGTTTAGCATCCTGAATTGCAGATGAAAGTTGCAAACACTTTACAACAGACAACACTAACCACTACTGTAGGCCAGAGACACAGACCAGAGGTATTACACACAATCAGATATAGTTTCATTGTTTAGATTGACACATCTGTACATGTCCACTGAAACAATGACAGATTACAGTGTTAATGTTGCTTCTATGCAGCAGCAGTGTTGTTCATTCTTTGACTGACATGAAATTGTGTTACGTGACAGAAATAATcatctctacagtacatcacaataCGACTGTACCAACCCCAATAGTCAAATACAGAATctcatttactctctctctcacacacacacacagataacagTCCACAGGCCCTGCAACAAAAACTGTCTAACGCAATGGAACCACAGAGAACCATCCAAAAATACCCCGACCTCCTTTGTTCAGTGAAAAAAAAAGATTGCTTAATACAGTAATGTTTGAGGTGATCTTTTACAAAAATATACAGTTGCTATGATACAAGTTAAAACTGTTAATAAATCTGATGGCTCTGCATTAAAAATATCACCTCACTAGGAGTCATTCAAAGTTAAATATAGATCTCTCCTCATATAGTTTCTATATGATTACTTATATTAAAGTGGTAGTTAAGGTTTAAGgaatttggcaaaaaaaaaaagcagtgcaCAAGTTGTGATCGAATCAAACGTGGATTATTTTTTACAGTCAGTAGAGTACTGCTCCCTCCTATGCAGGTCCTTCAGGGGCTAGGGAAAGTGACTAGGGGCTAGGGGAAGTGACTAGGGGCTACAGGGATAGTAGCCTGGTGCTCCAGTCCGTTTGTGCTTTAGCCAACTCCTGTGTGTTTGCGTTCATTGTCGTGACAACATGTATGGCTTGACAACAATAGAAGAGCTAGCTACAGCACATAGATGtaagatcttcatttgatcacgatgttgcaggagaactttcctgcaatgcaggaaatgtaaattgTGTAGTGTATTTGATGTTTAAAAGGGATTCTGAAGTTTGTGATTTCCACCTAAAATGTATCAAATGACTccttacaaaaatgtccattaataatAATCTACATTTCCAGTTCCTGCAGGatgattttcctgctgtagcaaactggttcaaattaagatcctacatctgtgcaGTGGGGGACCAGGCTCGGATGAGTATATTGAATCTCAAAAGAGGAAACGGAAATAATAAATCTCACCACACATGTAGTGGAGATCTTCTTTACCCCTAAGAAAAGACCTCAGCTGCTAGTCAGGAGTTTCTAAGGCCTGTTCACTTGATTGGCACAAGGTGTGGAGCGCTGCTTGGTCGGGTGCAGCGCAAGAACAGAGTAACAAGAAAGAGCCTACCGTGGCTATTGTTGGCTCGATGCAATACAGTTGTGGCGCATATCAAGTGAACAGACCTTTACGGTGTTACAGACCATCACAGGGAGAGGAGAGCCTAGAATAGGAGAACTGGGGAGACACACAGGGTGACATCTTCTGTTTGATGAAATGTCACAGACCAGTCATGTGGTGCATTTATCATTTCAATGTGTGACAAGACCATGATTTCAATATACTGCAATAAAGTTGCCAACTGAAAATGCATTTCAAAACGACTTGATGACATTTTGACATGTACATTTCCCAGCAGGAAAAATAAACGTATTACTCACACTACTTGAAATGAGATGTCTCTCAAACCAGCTTATTTTACAATGTCCATGAGTTGGTGGACATGCTGCAATTCTAGCTATAGTAAACGGTATGTATGTAGCGATGTACATGATGCAATATGCGAGCCCACCTGTCAAATTGAAATGTTGTTTCAGTTATTTTTGGCGAGATCTCCACAATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGTACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTtcagtggatagaagatggggCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTTCAGTGGATAGAAGATGGTGCACACTGAGGGCTGTtcagtggatagaagatggggCACACTGAGGGCTGTtcagtggatagaagatggggCACACTGAGGGCTGTtcagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2322989 lncRNA downstream 52816 41903314 ~ 41921439 (-) True G2030945
TU2322987 lncRNA downstream 58503 41891880 ~ 41915752 (-) False G2030944
TU2322985 lncRNA downstream 69179 41890181 ~ 41905076 (-) True G2030942
TU2322988 lncRNA downstream 79704 41891880 ~ 41894551 (-) True G2030944
TU2322979 lncRNA downstream 85096 41887698 ~ 41889159 (-) True G2030937
TU2323055 lncRNA upstream 858 41978494 ~ 41978943 (-) True G2030984
TU2323078 lncRNA upstream 54146 42031782 ~ 42032359 (-) True G2031004
TU2323091 lncRNA upstream 83242 42060878 ~ 42061560 (-) True G2031017
TU2323107 lncRNA upstream 116997 42094633 ~ 42094991 (-) True G2031029
TU2323075 lncRNA upstream 119512 42097148 ~ 42099490 (-) True G2031002
XR_005039889.1 mRNA downstream 57724 41906824 ~ 41916531 (-) True LOC118936287
XM_036964385.1 mRNA downstream 58331 41906824 ~ 41915924 (-) False LOC118936287
XR_005039888.1 mRNA downstream 58342 41906824 ~ 41915913 (-) False LOC118936287
LOC118944569 mRNA downstream 63251 41910803 ~ 41911004 (-) True LOC118944569
XR_005039827.1 mRNA downstream 78960 41891935 ~ 41895295 (-) True LOC110506831
XR_005039797.1 mRNA upstream 7002 41984638 ~ 41986095 (-) True LOC110506839
XM_036963906.1 mRNA upstream 8649 41986285 ~ 42027498 (-) False LOC110506148
XM_036963904.1 mRNA upstream 8649 41986285 ~ 42056568 (-) False LOC110506148
XM_036963905.1 mRNA upstream 8649 41986285 ~ 42056568 (-) True LOC110506148
XM_036963914.1 mRNA upstream 90096 42067732 ~ 42070472 (-) True LOC110506147
TU2322609 other downstream 406342 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 511065 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 762403 41211477 ~ 41211852 (-) True G2030291
TU2322043 other downstream 1067062 40906623 ~ 40907193 (-) True G2030156
TU2322050 other downstream 1075234 40898470 ~ 40899021 (-) True G2030162
TU2323116 other upstream 169724 42147360 ~ 42148871 (-) True LOC110506841
TU2323163 other upstream 238803 42216439 ~ 42217465 (-) True LOC118944568
TU2323351 other upstream 365646 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 365646 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 365646 42343282 ~ 42346725 (-) True G2031225

Expression Profile