RNA id: TCONS_00005162


Basic Information

Item Value
RNA id TCONS_00005162
length 889
lncRNA type sense_over
GC content 0.46
exon number 2
gene id XLOC_002789
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25402463 ~ 25570647 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tccaggaacaggattgagcacccctgctctaaactatTCTGTGTGTTGTCTTGCCACATAAAACACCTGCTGTTCTCTTTAGGCTCACCATACCGGGACAAGGTGACCATCGCCATCCTGCAGCTCCAGGAAGAGGGAAAATTGCACATGATGAAGGAGAAATGGTGGCGAGGAAACGGCTGTCCAGAAGAGGACAGCAAAGAGGCCAGTGCCCTGGGTGTGGAGAACATCGGGGGCATCTTTATCGTCCTGGCAGCCGGACTCGTGCTGTCTGTGTTCGTGGCCATCGGAGAGTTCATCTACAAATCACACAAAAACAGCGATATTGAAGAGTGCTGTGATGGAAGACCTGGGCATATCCCTCAGGTGCCACAAGGCGTTGAGGAAGAGAGGCAGACACAGAGGAAGAGCAGGCCTGTCTGGAGTCTTATGTAACCCCAAACGCATCCCGAGGAAAGAGACAATGGCCTAGATCCTCCTCCAACCGCCACGCAACCTGCGGGTGAAATCAGTCTCTGAGGCTGTGTGTTTTTCATTCAATCTCTGTGCTTTTTATTCATGAATTTGCAGGCTTTTATATGAGTggattgtggtaatttcacatAGACCTTGGTAATATCTTGAGCCGATGGAACTGGAGACGAAAGGAAtaatttattttgagatattaattaACGTACGAGCACATGGCGTAATTTGGTAGCATTTTATTGTGCTGTCCTTGATTTCATAAATAAAAGCATACATATTTTACACACACTTGGGGAATTCGTCTTGCTCTGTTGTTATTGGTGACGTGGGTTCTATTAATTGCAATGTTATGTAACCACAGAAAATAATGCTTCTAATCTGGGATGGCTCTACTGGGAATTCAATGTATGAATGTTTC

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006050 lncRNA downstream 12219 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00006049 lncRNA downstream 66708 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005762 lncRNA downstream 66708 25330599 ~ 25336184 (-) True XLOC_002787
TCONS_00005760 lncRNA downstream 68660 25329582 ~ 25334232 (-) False XLOC_002787
TCONS_00006052 lncRNA upstream 83643 25494173 ~ 25495284 (-) False XLOC_002790
TCONS_00006053 lncRNA upstream 83643 25494173 ~ 25496256 (-) False XLOC_002790
TCONS_00005165 lncRNA upstream 113158 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00005168 lncRNA upstream 164027 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005763 lncRNA upstream 276371 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005157 mRNA downstream 59371 25325808 ~ 25343521 (-) False XLOC_002787
TCONS_00005158 mRNA downstream 59371 25328662 ~ 25343521 (-) False XLOC_002787
TCONS_00005156 mRNA downstream 74078 25312337 ~ 25328814 (-) False XLOC_002787
TCONS_00005155 mRNA downstream 185545 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005154 mRNA downstream 198858 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005163 mRNA upstream 53690 25464220 ~ 25570647 (-) False XLOC_002789
TCONS_00005166 mRNA upstream 161842 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA upstream 162239 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005169 mRNA upstream 171411 25581941 ~ 25591194 (-) True XLOC_002791
TCONS_00005170 mRNA upstream 283865 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005133 other downstream 947160 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1019511 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1023116 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2571463 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2650544 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005164 other upstream 83643 25494173 ~ 25499474 (-) True XLOC_002790
TCONS_00005183 other upstream 721939 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 785754 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1333066 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1595741 27006271 ~ 27009124 (-) False XLOC_002814

Expression Profile

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