RNA id: TU2323303


Basic Information

Item Value
RNA id TU2323303
length 1460
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2031201
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42286656 ~ 42288310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTTCTGCTAGAAACTTAACATTTTGGTAGTTCCATTCCATTTCAGGGTCTAGGCATGGAATTAAAACTTAATAAAATGGAGGTACTTCCTAGACTTGTCCAATAACAAACACTTGTTacgtttttcaacattttgttaacgtgtgtcctaatgaacacaacccagatgTAAAAAGTATGACAATGGCTCCACCCAGCCCTCTAATAGGTTCAAACCCTTGACCTCCGCAGTGCAAGTTTCTCCGTCTATCTTATTCACTTACACCAAACAACATTTCTGTAATAAGAATTCAGAGTTGAGCTCTTGATCCTTTATTCTACTGACACACAAAACATCCTCCGTGAACCCTGGGATTCTAACCTGCATCCCTCCGGTCACCTGCCCACCTCTCAAACCTGGAGGCTAGCGTCTTCCCTCTGCTATGAAGACAAAGGCCACTCACTTGCCCTTGTTGCTGGCCAGGTTGTCCATGCAGGTCTTGATGTACTGATTGTAGTAGTCAATCTGGACGTTGTAGAAGGCGGTCTTGGAGTTGAGGGCGGCATTTGTCTGTTGGAGCTTCACCAGCTCCGCCTTCCTCCGCTGCCGATACCGCCGCTGGTTTCGGATGTCCTTGGCGATGTCGTTGATGAGGTCCTGGTAGCGGTTCTCAGGGTGCACCTTGCCCAGCTCTGCCAGGCGCTGCAGGTTGCTCCTGATCTTGTCCTTCTTGCCCTGCAGCGTCAGGCTGTCATCCACCACCGGCTTGGCCTGCTTCATCTTCTCTGGGGTTTTGGCGTCGCGGATGGCCCGTCGCTGCATAGCACGCTGGTACTCCACTTCCTGGAAGGGGGAAAACAGGGGTGGTGTCATGTGTTGCTGTGGCGCTGGGGGGAAGATTCCccaaggcacagatctaggatcagcttcccttcCCCCAATTCTAACCTAAACAGtagtggggaaaatgctaaactgactgcagatcagcgtctaggggctACTTCACCCTATACTGTCATTGTGCACAAATCATAGTTGAATAAAGCCAAGCAAAAGTGATAACTCCCGAACCCAGAGGAAGTCCTactcagttgactactttaaactGGTGCAAGCTACCAGTCTTTAGTGGTGTGCCCTCTCTGCTTTAACTCTATGGCACAACAATATAATCAAAAACAAAGATTAAGTGTTAGTGAGCTGCTAACTAATATTACAGGTTTgcatccttccctccccctcaatTCAAAGGAATTTatttgcatgggaaacatgtgtttacattgccaaaccAAATTAAAAAGATAAACAAtccaaaatgaacagtaaacattacacacaagttaaaataatagagacatttcaaatgttattatggctatgtacagtgttgtaaaaatgagcaaatagttgaagtacaaaagggaaaatcaataaaaaagtaaatatgggttgtatttacagtggtgtttgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323164 lncRNA downstream 66279 42219505 ~ 42220377 (-) True G2031083
TU2323075 lncRNA downstream 187166 42097148 ~ 42099490 (-) True G2031002
TU2323107 lncRNA downstream 191665 42094633 ~ 42094991 (-) True G2031029
TU2323091 lncRNA downstream 225096 42060878 ~ 42061560 (-) True G2031017
TU2323078 lncRNA downstream 254297 42031782 ~ 42032359 (-) True G2031004
TU2323346 lncRNA upstream 13743 42302053 ~ 42383608 (-) False G2031224
TU2323393 lncRNA upstream 82392 42370702 ~ 42372438 (-) True G2031260
TU2323336 lncRNA upstream 88811 42377121 ~ 42383608 (-) False G2031224
TU2323345 lncRNA upstream 88811 42377121 ~ 42383608 (-) False G2031224
TU2323347 lncRNA upstream 88811 42377121 ~ 42383608 (-) False G2031224
XM_036964584.1 mRNA downstream 69154 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 137790 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 148652 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 216184 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 230088 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 174271 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 174271 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 223970 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 236271 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 236273 42524583 ~ 42526465 (-) True LOC110526670
TU2323163 other downstream 69191 42216439 ~ 42217465 (-) True LOC118944568
TU2323116 other downstream 137785 42147360 ~ 42148871 (-) True LOC110506841
TU2322609 other downstream 718743 41542080 ~ 41567913 (-) True LOC110515873
TU2322603 other downstream 823466 41461857 ~ 41463190 (-) False LOC110515873
TU2322188 other downstream 1074804 41211477 ~ 41211852 (-) True G2030291
TU2323351 other upstream 54972 42343282 ~ 42346725 (-) False G2031225
TU2323352 other upstream 54972 42343282 ~ 42346725 (-) False G2031225
TU2323354 other upstream 54972 42343282 ~ 42346725 (-) True G2031225
TU2323389 other upstream 79944 42368254 ~ 42369909 (-) True G2031259
TU2323433 other upstream 170947 42459257 ~ 42461315 (-) True G2031286

Expression Profile