RNA id: TU2323433


Basic Information

Item Value
RNA id TU2323433
length 2059
RNA type TUCP
GC content 0.42
exon number 1
gene id G2031286
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42459257 ~ 42461315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACTGCACAGGTATAAGAGCAAATTAATATAAATTGTTACCCAAAACACATACATCAATAGATAGAAATACATtgatagatttaaaaaaaatactatattttAGAAGcaaaacacaaatataaatgttaTGATCTAGATATTATTTTGCCACATAAATACAATATGGAACAATATGTAGTTTTATACATCTTAGGTATGAGAAGAAAGTAAAGTGTCACATTTATTTTGACATAGAGTGACTGAACTGTTAGCAGTCCTGGGGAGTAGTTCCACTACATTTAATTCAGTTAGTCATTTACCTAGATTTTGTAGTAACTACATTCAAATCTTTGAAGTGTCTTTGGTAGTTAATTACTTGTTTTAGCCATGTAGCTATCTACTGGAACTGCCCACTACATTCATTCAACTCCCCCCTATTTATTTATCTCTCCCTGGCCACTGGGCTAAGCCAAAGCACTCACTCTGACTGTCACACAGATATCACTACactgttaacatctgactccagagtgatGTGTTCTTGCACTCATTTTTCTTAACTGTGTAGTcgatgacatttcagatttagatatgatAGTTTTTTACAAAGTAGTTtgtatgtagtgaactactttgtTAAAGTAACTATTAAAGTCAACTATATTTTTCTTTAGGGTAGCgtattcaatcagatccgctttagccgACATCCGCATAGCAGTTGTTCAGGcagtgtcggaggtggaactgcgttagagcAGATCCTGGCATTATACCTGAAGGGGACATTGCTATTGGCTGCACGGAGTCGCATTAAGAGAAATCTCATGCGAGCCTTATTTACAAGTTCGAAACACAGAATGTGAGATGTGATCTACACCTCGATTCagctgatagaaatcctcattattttctttaggctAATGATATTCAATTTGAGagtcattatttctatatagcctacactttgtCATTCTGAATATCTAACTTGAGTGACAATGATGAAGAGTAGCTCTTCACCaatttgacagctccaacacaGTTACATCTCCGGCACCgtcaaaacatcagctatgcaGGTGTCTGCTATCGCcggttaacgcttgatctgattgaatctaggccgaAGTGTAGCTTAAcctcttccagtgtgaagtaattgatACAAGCTATAAACTATATTTTCatagtagcttccccaacactgccTGTTAGTAACCCAGACAGATAGTTATAGTCAGTTATCTAGTTAGCAAAgggaacaaaacaaaacacaaacgCTTGGCCATTGAAGTGGATATATTCTTCTCTGGTAAGTTTAAAGGTGGGTGATAACGTCCACCTAAAGTGCTATACTTTGTGAGCTGGTCAGCTTTTGCATTGCTCTTTGAGGGCTTTGCCTTCTTACCACAGTGACTGACAGATCTACTGGGTCACCCTGAGTATAGTCTCTTCCCAGGGTTCAACTAGTATTTGCCTCCGCCATTTTCAGTTCCCCCATTTTGGAATTCTAGTGGTTCTattgctctctgtgtgtcttttgaAGGGCCAGAGGCAGGAAGTTGTTGCTTAGGGGTGTATGGGATTTTAATGTCACACATAGACTCACACATGCAGCCCCATTGTTTGTCGGATTCACCATCAGAAGTGCTCAGTCTTGGGGAGTGTTAAGGAGTCATGACAGTCAAAGTATGTGTGCATCTAGGTGTGCACGTGTATACTGTACATCTCTATGTCTAGGCATAGCCGCCTCTCAGTTCCGCAGGTGGCCTGGGCCCTCTGTTACTACACAGATCCTCCAGGGGGCGCAACAGAGcgtcctctctaggtttataggGTATTGCGTAGCTGTCCTCCTCCATCAGTATCCGGTTCAACGTCTGCTCGTTGTTAATGTGGCGACGCACCATCAGTACATACTGGCGCCCTTCCTCCAGAGGGGGGCAGTCACACACGTTGGGCACCCACAGGAACTCGCGGTGCTCCAGGCGGAAGCGATTGTGGTAGGTGTGGATGATCTGGACATCGTAGCGCGTCTCCTCGCCCCGGTACAGCTTGCTCATGACTTTGGCACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2323456 lncRNA downstream 466 42458567 ~ 42458791 (-) True G2031307
TU2323455 lncRNA downstream 746 42458159 ~ 42458511 (-) True G2031306
TU2323356 lncRNA downstream 1337 42456845 ~ 42457920 (-) True G2031227
TU2323428 lncRNA downstream 40402 42417395 ~ 42418855 (-) True G2031281
TU2323427 lncRNA downstream 42417 42416546 ~ 42416840 (-) True G2031280
TU2323434 lncRNA upstream 661 42461976 ~ 42462363 (-) True G2031287
TU2323459 lncRNA upstream 9354 42470669 ~ 42487634 (-) True G2031309
TU2323468 lncRNA upstream 46801 42508116 ~ 42508347 (-) True G2031318
TU2323473 lncRNA upstream 62555 42523870 ~ 42524088 (-) True G2031323
TU2323492 lncRNA upstream 96037 42557352 ~ 42557581 (-) True G2031342
XM_036964584.1 mRNA downstream 241755 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 310391 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 321253 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 388785 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 402689 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 1266 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 1266 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 50965 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 63266 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 63268 42524583 ~ 42526465 (-) True LOC110526670
TU2323389 other downstream 89348 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 112532 42343282 ~ 42346725 (-) False G2031225
TU2323352 other downstream 112532 42343282 ~ 42346725 (-) False G2031225
TU2323354 other downstream 112532 42343282 ~ 42346725 (-) True G2031225
TU2323163 other downstream 241792 42216439 ~ 42217465 (-) True LOC118944568
TU2323493 other upstream 96482 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 154929 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 723321 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 730383 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 1107845 43569160 ~ 43570054 (-) True G2032150

Expression Profile