RNA id: TU2323434



Basic Information


Item Value
RNA id TU2323434
length 388
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G2031287
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42461976 ~ 42462363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACACGCTGTTGCCTTGGCTGCCTCCTCTGGAGTAGTAGCTGCTTTCTTATTGTTCACAATTCTTCATCCACCCTTTTCACCCTCTGCTTTACTTTCCCTGAGAGTGTGAGTATCCATAGCAACGACTtaatgaagagacatgagagaacTGTTAGCTGAAGTTAGCCAGCTAATTTTCTCCACTCAACTCAAACAGCAGATACTTCTGTTCTGATTCCAgatttgaatagcagagaagtagaggaagatatCAAATGCCCAACGTGTCTAACTTGTTGAGAAACTGGtcagctgatttgtgtcaaaagttgCAGTGAATGGAATGTTAGAAGTCTGGAAGTTGATATTGTCACAATGGGATCTTTAGAAATCCCATGGAATTGAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2323456 lncRNA downstream 3185 42458567 ~ 42458791 (-) True G2031307
TU2323455 lncRNA downstream 3465 42458159 ~ 42458511 (-) True G2031306
TU2323356 lncRNA downstream 4056 42456845 ~ 42457920 (-) True G2031227
TU2323428 lncRNA downstream 43121 42417395 ~ 42418855 (-) True G2031281
TU2323427 lncRNA downstream 45136 42416546 ~ 42416840 (-) True G2031280
TU2323459 lncRNA upstream 8306 42470669 ~ 42487634 (-) True G2031309
TU2323468 lncRNA upstream 45753 42508116 ~ 42508347 (-) True G2031318
TU2323473 lncRNA upstream 61507 42523870 ~ 42524088 (-) True G2031323
TU2323492 lncRNA upstream 94989 42557352 ~ 42557581 (-) True G2031342
TU2323515 lncRNA upstream 125238 42587601 ~ 42587854 (-) True G2031357
XM_036964584.1 mRNA downstream 244474 42214901 ~ 42217502 (-) False LOC118944568
XM_021586700.2 mRNA downstream 313110 42147764 ~ 42148866 (-) False LOC110506841
XM_036963913.1 mRNA downstream 323972 42118421 ~ 42138004 (-) True LOC118944459
XM_036963914.1 mRNA downstream 391504 42067732 ~ 42070472 (-) True LOC110506147
XM_036963905.1 mRNA downstream 405408 41986285 ~ 42056568 (-) True LOC110506148
XM_036963237.1 mRNA upstream 218 42462581 ~ 42502104 (-) False LOC110506162
XM_036963238.1 mRNA upstream 218 42462581 ~ 42509613 (-) True LOC110506162
XM_036963722.1 mRNA upstream 49917 42512280 ~ 42516373 (-) True LOC110506854
XM_021607810.2 mRNA upstream 62218 42524581 ~ 42526465 (-) False LOC110526670
XM_021607811.2 mRNA upstream 62220 42524583 ~ 42526465 (-) True LOC110526670
TU2323433 other downstream 661 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 92067 42368254 ~ 42369909 (-) True G2031259
TU2323351 other downstream 115251 42343282 ~ 42346725 (-) False G2031225
TU2323352 other downstream 115251 42343282 ~ 42346725 (-) False G2031225
TU2323354 other downstream 115251 42343282 ~ 42346725 (-) True G2031225
TU2323493 other upstream 95434 42557797 ~ 42558903 (-) True G2031343
TU2323769 other upstream 153881 42616244 ~ 42621546 (-) True LOC110513924
TU2324292 other upstream 722273 43184636 ~ 43185724 (-) True G2031974
TU2324286 other upstream 729335 43191698 ~ 43197828 (-) True LOC110506858
TU2324491 other upstream 1106797 43569160 ~ 43570054 (-) True G2032150

Expression Profile