RNA id: TU2324299



Basic Information


Item Value
RNA id TU2324299
length 1095
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2031978
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 43195723 ~ 43196866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAAACTTCTGTCATCTCTATCTTACCCTACAAGTAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCACCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCACCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCACCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCATCAGACTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCACCTGTCTTCTGTCATCTCTATTCTATCCTAACAGGAACCATAGTAACCACCTGTCTTCTGTCATCTCTTTTCCTCCCACCAGGTGTTTGTGTAGTAATAATGGCAAAGAGTCGGAGCTAAGATTTAAAGGGCGACTGAACTCAGTGATTCCCTttgtttttctgttgctcatttaaaggcctagtgcagtcaaatgtgattttcctgagttttatatacattttcacaCTGAGGTTGGACTAATACTGTGAATTTGTGAAAATGATAATGTACTTTTAGTGTAAAAGCTGTTtgaaagaccacctgaaatgtcggcctgttttggtgggatgagGGTTTTGTCCGTGGTTACATCACCATGCTgtgaattagttaatagaccaatcaGAAAGAGTTCCAagcctctctgccaataacagatagttgtcagttttcccctccccattcAGACCACTctgacagtcctagcaaaattcttgcttgagaaattactctttgctaagaagctattt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2324290 lncRNA downstream 18657 43176713 ~ 43177066 (-) True G2031972
TU2324287 lncRNA downstream 21534 43173929 ~ 43174189 (-) True G2031969
TU2324283 lncRNA downstream 24818 43170672 ~ 43170905 (-) True G2031965
TU2324281 lncRNA downstream 25287 43170138 ~ 43170436 (-) True G2031963
TU2324276 lncRNA downstream 34826 43160474 ~ 43160897 (-) True G2031961
TU2324304 lncRNA upstream 8794 43205660 ~ 43205874 (-) True G2031983
TU2324368 lncRNA upstream 195444 43392310 ~ 43392543 (-) True G2032041
TU2324371 lncRNA upstream 210633 43407499 ~ 43407759 (-) True G2032044
TU2324372 lncRNA upstream 212789 43409655 ~ 43410059 (-) True G2032045
TU2324376 lncRNA upstream 216521 43413387 ~ 43414307 (-) True G2032049
XM_036963628.1 mRNA downstream 32711 43161768 ~ 43163012 (-) True LOC118944425
XM_036963627.1 mRNA downstream 208441 42964294 ~ 42987282 (-) True LOC110526985
XM_036964081.1 mRNA downstream 241019 42940158 ~ 42954704 (-) True LOC110526700
XM_036964082.1 mRNA downstream 241144 42940157 ~ 42954579 (-) False LOC110526700
XM_036963578.1 mRNA downstream 278898 42906669 ~ 42916825 (-) True LOC110526696
XM_036963200.1 mRNA upstream 231792 43428658 ~ 43439196 (-) True LOC110506867
LOC118944426 mRNA upstream 584064 43780930 ~ 43792853 (-) True LOC118944426
XM_036963442.1 mRNA upstream 699149 43896015 ~ 43949012 (-) False LOC110526988
XM_036963439.1 mRNA upstream 702545 43899411 ~ 43949007 (-) False LOC110526988
XM_036963441.1 mRNA upstream 702545 43899411 ~ 43949011 (-) False LOC110526988
TU2324292 other downstream 9999 43184636 ~ 43185724 (-) True G2031974
TU2323769 other downstream 574177 42616244 ~ 42621546 (-) True LOC110513924
TU2323493 other downstream 636820 42557797 ~ 42558903 (-) True G2031343
TU2323433 other downstream 734408 42459257 ~ 42461315 (-) True G2031286
TU2323389 other downstream 825814 42368254 ~ 42369909 (-) True G2031259
TU2324491 other upstream 372294 43569160 ~ 43570054 (-) True G2032150
TU2324940 other upstream 682327 43879193 ~ 43881732 (-) True G2032544
TU2324949 other upstream 702634 43899500 ~ 43905240 (-) False LOC110526988
TU2325823 other upstream 1656987 44853853 ~ 44923017 (-) True LOC110506903
TU2325845 other upstream 1742372 44939238 ~ 44956893 (-) True LOC110506178

Expression Profile