RNA id: TCONS_00005163


Basic Information

Item Value
RNA id TCONS_00005163
length 747
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_002789
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25402463 ~ 25570647 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAAGGATATTGGGACTCTACTGAACTTGCGACAACCACGTAATCTTTTCACAACTTAGGTTCCTGCTGGAAAGACTTTCAAAAAAGAGGCATCTTTGAGACACGGGAAAATGAACCTGTCAGTATGGATGAACTCGCCTTTAAATTTGCTGTTACAAGTATCAATCGAAACAGAACTTTGATGCCAAACACCACGTTGACCTACGACATCCAGAGAGTAAACCTCTTTGACAGCTTTGAAGCCTCCAGAAGGGTGTGTGACCAGTTGGCCCTGGGGGTTGCGGCAGTCTTCGGCCCTTCTCACAGCTCCTCGGTCAGTGCCGTTCAATCCATTTGCAATGCCCTAGAGGTGCCGCACATCCAGACACGCTGGAAACACCCGTCTGTGGACAATAAAGACAATTTTTACATTAACCTCTACCCCGAGTACACCTCCATAAGCAGGGCTATCCTGGACATTGTCATTTTCTACAAATGGAAGTGCGTTactgtggtttatgaggacagcACAGGTTTAATGCGTATGCAGGAACTGATCAAAGCTCCATCTAAAAACAACTTGAAGATCCGTATCCGCCAGCTGCCGTCGGGAGGAGGCGACAGTCGCCCCCTTCTGAAGGAGATGAAGAAAGAGAAGGAGTTTTACGTCATCTTCGACTGCTCCTACCAAGTAGCCGCCGAGCTTCTCAAACAGCTGATGTCAATGGGCATGATGACGGAGTACTATCATTTCTTCTTCACTACAT

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0006811 ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6502 Predicted to enable glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be active in postsynaptic membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1).

Ensembl:

ensembl_id ENSDART00000134215

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005162 lncRNA downstream 53690 25402892 ~ 25410530 (-) False XLOC_002789
TCONS_00005161 lncRNA downstream 53708 25402892 ~ 25410512 (-) False XLOC_002789
TCONS_00006051 lncRNA downstream 58407 25402892 ~ 25405813 (-) False XLOC_002789
TCONS_00006050 lncRNA downstream 73547 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00006049 lncRNA downstream 128036 25329582 ~ 25336184 (-) False XLOC_002787
TCONS_00005168 lncRNA upstream 3910 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005763 lncRNA upstream 116254 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005764 lncRNA upstream 120225 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005171 lncRNA upstream 126512 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00006054 lncRNA upstream 561822 26132469 ~ 26142597 (-) False XLOC_002799
TCONS_00005157 mRNA downstream 120699 25325808 ~ 25343521 (-) False XLOC_002787
TCONS_00005158 mRNA downstream 120699 25328662 ~ 25343521 (-) False XLOC_002787
TCONS_00005156 mRNA downstream 135406 25312337 ~ 25328814 (-) False XLOC_002787
TCONS_00005155 mRNA downstream 246873 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005154 mRNA downstream 260186 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005166 mRNA upstream 1725 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA upstream 2122 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005169 mRNA upstream 11294 25581941 ~ 25591194 (-) True XLOC_002791
TCONS_00005170 mRNA upstream 123748 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005172 mRNA upstream 126989 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005133 other downstream 1008488 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1080839 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1084444 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2632791 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2711872 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005183 other upstream 561822 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 625637 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1172949 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1435624 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1599309 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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