RNA id: TCONS_00006053


Basic Information

Item Value
RNA id TCONS_00006053
length 671
lncRNA type intronic
GC content 0.41
exon number 3
gene id XLOC_002790
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25494173 ~ 25499474 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGGACCTGATCCACACCAGCAGATCCTCCACAAGGTGACTGAGCTCAATGATGTCCCCGACATAGAGCTCATTAAGTGCTTCTTCCCGCCACAGTGAGACATCGTGTACTACGGAGCCACATTTCAACCGCAGGTCCAGGATCGGTATGTGAGTGCGAGTCATTCTGGGCACTTCAACCTGGAAAATGACAAAAAGGTCGTGAAGGAGGACAGAGGGCCTCCCTTGCAGCTCTTTTAGCCTCCTCACTTATGGCTAGCGGAGCCGTCCTAAATTTGATGGTgcctttatttacaaataaacatcGGCGGCCATATTTGTTTGAGATggttacattttttacaatatatgaGTGTCCCTCTTCAAATTCAGGGTCACTGCCGTTTTTTATGGACAGATAAACTGCATCACCATCCGTAAGGGCACATAAAGATGTTACTTTGTAGGTGtcaacaattattttgttttcatgtttaataaatgtcacAGCCTTTTGGCTACTGTGCACTTTAACACAAGTGATGTGCAGTGGTGGTGGGCGACTGTACGGTGTTGCCATCCTAAGAATAAGAAAAAAAGGTTACTTTGTATTAGTTGTAAATATTATGTAGAATAAATTATCATTTCTTTTTAACTCAATTCATCAATTAAACATATCAATTAATCTAAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903225 negative regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005162 lncRNA downstream 83643 25402892 ~ 25410530 (-) False XLOC_002789
TCONS_00005161 lncRNA downstream 83661 25402892 ~ 25410512 (-) False XLOC_002789
TCONS_00006051 lncRNA downstream 88360 25402892 ~ 25405813 (-) False XLOC_002789
TCONS_00006050 lncRNA downstream 103500 25380998 ~ 25390673 (-) True XLOC_002788
TCONS_00005762 lncRNA downstream 157989 25330599 ~ 25336184 (-) True XLOC_002787
TCONS_00005165 lncRNA upstream 27432 25523688 ~ 25570629 (-) True XLOC_002789
TCONS_00005168 lncRNA upstream 78301 25574557 ~ 25575573 (-) False XLOC_002791
TCONS_00005763 lncRNA upstream 190645 25686901 ~ 25687218 (-) True XLOC_002792
TCONS_00005764 lncRNA upstream 194616 25690872 ~ 25691670 (-) True XLOC_002793
TCONS_00005171 lncRNA upstream 200903 25697159 ~ 25699359 (-) False XLOC_002794
TCONS_00005157 mRNA downstream 150652 25325808 ~ 25343521 (-) False XLOC_002787
TCONS_00005158 mRNA downstream 150652 25328662 ~ 25343521 (-) False XLOC_002787
TCONS_00005156 mRNA downstream 165359 25312337 ~ 25328814 (-) False XLOC_002787
TCONS_00005155 mRNA downstream 276826 25214270 ~ 25217347 (-) True XLOC_002786
TCONS_00005154 mRNA downstream 290139 25108853 ~ 25204034 (-) True XLOC_002785
TCONS_00005166 mRNA upstream 76116 25572372 ~ 25657506 (-) False XLOC_002791
TCONS_00005167 mRNA upstream 76513 25572769 ~ 25628555 (-) False XLOC_002791
TCONS_00005169 mRNA upstream 85685 25581941 ~ 25591194 (-) True XLOC_002791
TCONS_00005170 mRNA upstream 198139 25694395 ~ 25699454 (-) False XLOC_002794
TCONS_00005172 mRNA upstream 201380 25697636 ~ 25716953 (-) False XLOC_002794
TCONS_00005133 other downstream 1038441 24455616 ~ 24455732 (-) True XLOC_002771
TCONS_00005130 other downstream 1110792 24383266 ~ 24383381 (-) True XLOC_002768
TCONS_00005129 other downstream 1114397 24377417 ~ 24379776 (-) True XLOC_002767
TCONS_00005104 other downstream 2662744 22828366 ~ 22831429 (-) True XLOC_002753
TCONS_00005097 other downstream 2741825 22752232 ~ 22752348 (-) True XLOC_002751
TCONS_00005183 other upstream 636213 26132469 ~ 26141081 (-) False XLOC_002799
TCONS_00005187 other upstream 700028 26196284 ~ 26202523 (-) False XLOC_002800
TCONS_00005203 other upstream 1247340 26743596 ~ 26744131 (-) True XLOC_002804
TCONS_00005214 other upstream 1510015 27006271 ~ 27009124 (-) False XLOC_002814
TCONS_00005218 other upstream 1673700 27169956 ~ 27170072 (-) True XLOC_002817

Expression Profile

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