RNA id: TU2331271


Basic Information

Item Value
RNA id TU2331271
length 616
lncRNA type intronic
GC content 0.39
exon number 1
gene id G2037836
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50331187 ~ 50331802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTATATAACATCCCATTGGGACCATACTGTGGATATCATTACATAACATCCCATTGGGACCATACTGTGGATATCATTATATAACATCCCATTGGGACCATACTGTGGATTAGGACCATTCTGTGGATATCCTTACATAACATCCCATTGGGACCATACTGTGAATATCATTATATAACATCCCATTAGGACCATACTGTGGATATCATTACATAACATCCCATTGGGACCATACTGTGGATATCATTATATAACATCCCATTAGGACCATACTGTGGATATCATTATATAACATCCCATTAGAGAACACTGTGGATATCATTACATAACATCCCATTAGAGAACACTGTGGATATCATTACATAACATCCCATTAGAGAACACTGTGGATATCATTACATAACACCCCATTAGAGAACACTGTGGATATCATTACATAACACCCCAGTATGACACTTTAAAACTGGTTTAATTGAAtgtttaattaactaggcaagtcaattaagaacaaattcttatttacaatgacggcctaccccggccaaacccggacgacgctgggccaattgtgcgccaccctatgggactcccaatcacggccggatgtgatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2331270 lncRNA upstream 1363 50329596 ~ 50329824 (+) True G2037835
TU2331262 lncRNA upstream 7748 50321128 ~ 50323439 (+) False G2037833
TU2331272 lncRNA downstream 473 50332275 ~ 50332572 (+) True G2037837
TU2331273 lncRNA downstream 1192 50332994 ~ 50333231 (+) True G2037838
TU2331274 lncRNA downstream 2068 50333870 ~ 50334181 (+) True G2037839
TU2331288 lncRNA downstream 38476 50370278 ~ 50373096 (+) True LOC110506216
TU2331302 lncRNA downstream 47923 50379725 ~ 50380446 (+) True G2037855
XM_036964253.1 mRNA upstream 179464 50109946 ~ 50151723 (+) True LOC110506980
XM_036963836.1 mRNA upstream 282600 50041108 ~ 50048587 (+) False LOC110526794
XM_036963714.1 mRNA downstream 12179 50343981 ~ 50349532 (+) False LOC110506984
XM_036963715.1 mRNA downstream 28709 50360511 ~ 50371743 (+) False LOC110506216
XR_005039904.1 mRNA downstream 108765 50440567 ~ 50446781 (+) True LOC110506995
XM_036964498.1 mRNA downstream 131823 50463625 ~ 50464821 (+) True LOC110506997
XR_005039813.1 mRNA downstream 212278 50544080 ~ 50599404 (+) True LOC118944475
TU2331268 other upstream 2117 50328320 ~ 50329070 (+) True G2037834
TU2331264 other upstream 7748 50320922 ~ 50323439 (+) False G2037833
TU2331260 other upstream 7748 50321128 ~ 50323439 (+) False G2037833
TU2330739 other upstream 420671 49909056 ~ 49910516 (+) True G2037387
TU2330191 other upstream 928175 49401400 ~ 49403012 (+) True G2036925
TU2331293 other downstream 12908 50344710 ~ 50347777 (+) True LOC110506984
TU2331745 other downstream 465496 50797298 ~ 50801241 (+) False LOC110527008
TU2331746 other downstream 465496 50797298 ~ 50801241 (+) True LOC110527008
TU2331845 other downstream 668949 51000751 ~ 51002879 (+) False G2038302
TU2331846 other downstream 668949 51000751 ~ 51003835 (+) True G2038302

Expression Profile