RNA id: TU2331475


Basic Information

Item Value
RNA id TU2331475
length 2092
lncRNA type antisense_over
GC content 0.51
exon number 5
gene id G2037989
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50468216 ~ 50471240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACACAATTTGATTGCATTTGAACATCTACATAAAAGCCCTCACCCCGACCCCAACACTTCAGTTTATGTTTCGACAGTACATACATGGGAGAGCCTTTTGAAAACATAGTGTTATTATAACTGCCTACTTTTAGTATGGACATCATTCCATATTCACCATCAAAAAACATAGCTACCTTTATACTGAAGTGTTGGCTTTGCATATCaacatatttcaaatcaaatagaACACTACCGTTGCTTTTTGACGTTGTAACATTCCAATGCTCTTACACAGACGGAATAATGTTATTATATGTGCACTCTAATCTTATTTCCTTTTGATTGAGGGGAAAGCGTTTGAATATGGCGCTTGCTCACATTTCCCCCCGGAACATTGACAATTGCAGTAAATGAGAATTCAGAATCATAATCATATCCAGGATCTATGAAAAATGTGTCCCGTCGGTGTGTCTAGCTTGTCTGGCTTTTCCTGTAGGCTGAGGCACTGTTCTGTTCTAGGGAAGGGAGCCCTGCTCGCTATCTCGCTCTCCAACCAAGGTGCATGAATTGAGGAGCAAActgaagtagagaggagaaatagCAACTCTTGGGAGGACATTGgaattaaatgaaataatcttTGTTTAAAGGCCAAAAGCTGAATCGTGTTGGTTCCACTTTTaacaataaaaacaaatatttttatttcattcGATTGTCCTCCAAGAGTTGCTAAATCTCCTGTCTATACGGTTCTTCTCtagggcagggtttcccaaacttggtcctggggcccccactgagtgcacatttagttttttgtcctagcactacacagctggttCATTATCACGAAGAACACTGATCTCAGAataagacaaagagagaaagcgtCAAAATGGTTTTGGTGTTTCTCTGCATCAGGAGCTCTTGTcctggctgaggctggggttgaggGTGGATGGAGGGTCGATTCAGGAGCTCTTGTCCTGGCTGGGgctggggttgaggggtggatggatggtcgATTCAGGAGCTCTTGTcctggctgaggctggggttgaggGTGGATGGATGGTCGATTCAGGAGCTCTTCTcctggctgaggctggggttgaggggtggatggatggtcgATTCAGGAGCTCTTGTCccggctgaggctggggttgaggggtggatggatggtcgATTCAGGAGCTCTTGTCccggctgaggctggggttgaggggtggatggatggttgATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagagtcGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGATTCAGGAACTTTTGTCCTGGCTGAGGCTGGTGTTGAGGGTGGATGGATGGTCGATTCAGGAGCTCTTGTCCTGGCTGAGGCTGGTGTTGAGGGTGGATGGATGGTCGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggatggttgATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagagtcGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggggtggatggagggtcGATTCAGGAACTTTTGTCCTGGCTGAGGCTGGTGTTGAGGGTGGATGGATGGTCGATTCAGGAGCTCTTGTCCTGGCTGAGGCTGGGTTTGAGGGgttgaggggtggatggagggtcAATTCAGGAGCTCTTGTCCTGGCTGAGGCTGGTGTTGAGGGTGGATGGATGGTCGATTCAGGAGCTCTTGTcctggctgaggctggggttgaggGGTGGATGAAGGGTCGATTCAGGAGCTTTTGTCTTGGCTGAGGCTGGGgttgaggggtggatggagggtcGCGGTGGAGAGCTGCTCGTAGCTGGGTAGGCTATCCTGGCTGGGGACACCTGCCCCACCCTGTGACCTCCTCCTACCTTGCCCCTGGCTTGTCCCAGACAACAGCTGGGTAAGGGATTCTGCGATTTGGTTGAGTGTCTGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2331318 lncRNA upstream 74332 50393435 ~ 50393884 (+) True G2037867
TU2331302 lncRNA upstream 87770 50379725 ~ 50380446 (+) True G2037855
TU2331288 lncRNA upstream 95120 50370278 ~ 50373096 (+) True LOC110506216
TU2331274 lncRNA upstream 134035 50333870 ~ 50334181 (+) True G2037839
TU2331273 lncRNA upstream 134985 50332994 ~ 50333231 (+) True G2037838
TU2331543 lncRNA downstream 112766 50584006 ~ 50588160 (+) True G2038047
TU2331551 lncRNA downstream 130798 50602038 ~ 50603517 (+) True G2038054
TU2331579 lncRNA downstream 184047 50655287 ~ 50656652 (+) True G2038081
TU2331596 lncRNA downstream 225565 50696805 ~ 50698111 (+) True G2038098
TU2331597 lncRNA downstream 225870 50697110 ~ 50697568 (+) True G2038099
XM_036964498.1 mRNA upstream 3395 50463625 ~ 50464821 (+) True LOC110506997
XR_005039904.1 mRNA upstream 21435 50440567 ~ 50446781 (+) True LOC110506995
XM_036963715.1 mRNA upstream 96473 50360511 ~ 50371743 (+) False LOC110506216
XM_036963714.1 mRNA upstream 118684 50343981 ~ 50349532 (+) False LOC110506984
XM_036964253.1 mRNA upstream 316493 50109946 ~ 50151723 (+) True LOC110506980
XR_005039813.1 mRNA downstream 72840 50544080 ~ 50599404 (+) True LOC118944475
XM_036963390.1 mRNA downstream 278913 50750153 ~ 50772510 (+) False LOC110526797
XM_036963389.1 mRNA downstream 278950 50750190 ~ 50772510 (+) True LOC110526797
XM_036964508.1 mRNA downstream 320278 50791518 ~ 50803181 (+) False LOC110527008
XR_005039903.1 mRNA downstream 320283 50791523 ~ 50803181 (+) False LOC110527008
TU2331293 other upstream 120439 50344710 ~ 50347777 (+) True LOC110506984
TU2331268 other upstream 139146 50328320 ~ 50329070 (+) True G2037834
TU2331264 other upstream 144777 50320922 ~ 50323439 (+) False G2037833
TU2331260 other upstream 144777 50321128 ~ 50323439 (+) False G2037833
TU2330739 other upstream 557700 49909056 ~ 49910516 (+) True G2037387
TU2331745 other downstream 326058 50797298 ~ 50801241 (+) False LOC110527008
TU2331746 other downstream 326058 50797298 ~ 50801241 (+) True LOC110527008
TU2331845 other downstream 529511 51000751 ~ 51002879 (+) False G2038302
TU2331846 other downstream 529511 51000751 ~ 51003835 (+) True G2038302
TU2331852 other downstream 534392 51005632 ~ 51006168 (+) True G2038305

Expression Profile