RNA id: XM_021587312.2


Basic Information

Item Value
RNA id XM_021587312.2
length 2447
RNA type mRNA
GC content 0.46
exon number 7
gene id laynb
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4270462 ~ 4276432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AgcattcctcctttcctccttttaTCTTCGATGGATTTACTCAAAATAATGAGCCTTTCGCAGTGAGAGGGGTTTAAAAAACGCTTTACCGGATCCTGCAAAAATACTTCGACCTAATTCTGATTGGACCATATGCGATGTTTCGCCCCTCTCCCAGGCTTTGACGGGCGGTTACGGATTTTCTCGAATTTACACGAAAGTTTAGTGAAGATGAAGAAATGGATTTTGTTAAACTGCTCGGGACTGTTCTCGCCGTTTTCTGCCACTTAGGATTCACCCAATTTGAACACAATGGCCAGAGGATCTGTCGACGTGGCACAGAGCGACCCTGCTACAGGATCAACTACTTCCAGGACCCACGGCGGAGGGTGACCTTCGATAATGCCAGGCAGGCCTGCAGGACGGATGGGGCAGAGCTCCTCAGTATCGAGACTGACAATGAGCAGCGTCTGGTCGAGAGGTTCATCCAACAGTTGCAGGCCACTGATGGGGACTTCTGGATCGGGCTGCACAGAAGCCCACGCCACTGGGTGACTACCATAGGATGCCCTTCGCAGTACTACTGGCTGGATGGCAGCAAGGCCAGATTCAGAAACTGGCATTGGGACGAGCCATCGTGTGGCAACGAGATGTGTGTGGTGCTGTACCACCAGCCTTCTGCCCCCCCTGACGAGGGGGGGCGCTTAATGTTCCAGTGGAACGATGACAACTGCAACACCAGGAACAATTTTGTCTGCAAGTACTCCGAAGaAAAGTTACCAGTGTTTACTGTGGTGTGGAATTCATTATACACAGTTGCCCCAATTATATCTTTAATACCAATCCTCCCATCAGCTACAGTGAGTGATGAGAAGACAAAACTAGGACTGTCTGAATCATCAGTATCTCTTTCAGATAATGTCCTGCATGTCTCCTACATTCTATTTGCTACTATCCCtattctactgctgctgcttGTGGCTACAGGAGTCTTCTGCTATAAACGGGCTGCCAAAAGGAGAAAGTCTCCAACAGACAGCTACCCTAAGCAAGAGCAATGGGGTACAATGTCCACTGCGGCCTGCAACATCCAAGGACCCTATGCCTACCAGGACATCACCAAGCTTCAACCAGCCGAACTGGAGAGCATGGCACCTGAATCAATCAAGAAGATGTCCTTCTGTGCCTCCTCTTTTGATTCCCAGTGTGATGATTACGAGAATGTTTCAAACAcggagacagtgacagagagtgGCTTTGTGACCAACGATATCTACGAGGCCTGCCAAAACCAGGGTCGGCACTATCTCAACGAGACTGGATGGGTGGAGAATGAGATCTATGAGTAATGTTGCAGCCATGCAGTGCCTCTCTCTTTACCACATGTCCACTGGGCCATCTGGGCATCTGACTCTTTTTGTCTCCATTCAACTTTCATATCTCCTGCTGGTGGGTTGTATGGCATCATGTGATGCGAGACAGGATGGACAGATCCTGTGTGGTATTATATAATGTTCGCTTTAGGGTACGCCCACTAACCGTACAAAGAGGCCTATGGTGTCACCCCTATTTGAGGTTTCCTGTGTGGAAGTTGATGTCAGGGAACAGGACAATATCTTCGGAAATTCGGATAACAGAAGTCTGACCCCACGACACCTCTGAGCAATGGCTGTCTGCGAGAGATGATCCTCCCAGTGATGTTTAACAAAGCCTCCACTGCTATGACACTAGTTTGAGCTGGCTGGATAAAGTCATAATGTGCCTTTTCATGGCTACACCAAAGTCCTGGTTGAATAACAGAGTGTAGCATTTGTTTATTTGCCTATTCCTGTGTCTTCGTCTTATAATCTTGTATTTATCACAATGTTGTGAGAAAAATCaagaaaatacatgttttgcGTACATGGTAGATTCAAGTGGGCCTGACTAGAGTGTTGTGAAAAAGTAGTCTTAACGAGCTAAAGCTGAGTGTTCTTGGAGGATGTCGGACAGGAAATACCAAAAGCACATCTGGAACTCGCACATACAGGAAATCTAGCAGTGACAGCAGATGCTTTTGGGGTGCTGCGCTCAACAGTTTTCCATGTAAGGCTGTCACGATAGGTTAATTAACAAAACATGTACTTGCTGGACCTGTAGGCCTATATGGGTGATATTTCAAATATCGCGCACCGCTCTGgctacaaataaatgttttgttttaattttttttataacaATGTGCCTTTTATTGTGTTTTTGTGTACAAGAAGAAAGAAAAATAGACCATTTATAAGCCGTAAAACCTTTGGTAAGATATAGCTTACTTTACAGTACTATTGCAAACAGTACTTACTTATGGCTTCCATATTGTTTGTTTGACCGGCAGATGGTGCTGTTTCATGTCATATTTCAACTGTCTTTCCATTGGTCTCGAACTCCAGCAGTTTCACTCAAATTCTATGTTGATCGCTAGATGTGCAAAGGGT

Function

GO: NA

KEGG:

id description
K10077 LAYN; layilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2337516 lncRNA downstream 74328 4195279 ~ 4196134 (-) True G2043374
TU2337515 lncRNA downstream 76895 4192793 ~ 4193567 (-) True G2043373
TU2337473 lncRNA downstream 198545 4071105 ~ 4071917 (-) True G2043337
TU2337360 lncRNA downstream 316546 3918465 ~ 3953916 (-) True G2043227
TU2336994 lncRNA downstream 404844 3865370 ~ 3865618 (-) True G2042874
TU2337585 lncRNA upstream 39270 4315702 ~ 4316070 (-) True G2043439
TU2337587 lncRNA upstream 41361 4317793 ~ 4318109 (-) True G2043441
TU2337588 lncRNA upstream 42471 4318903 ~ 4319268 (-) True G2043442
TU2337589 lncRNA upstream 43676 4320108 ~ 4320351 (-) True G2043443
TU2337592 lncRNA upstream 47167 4323599 ~ 4323821 (-) True G2043446
XM_036964956.1 mRNA downstream 1483 4200942 ~ 4268979 (-) True sik2b
XM_021587307.2 mRNA downstream 121552 4144222 ~ 4148910 (-) True LOC110507359
XM_021587298.2 mRNA downstream 381205 3881456 ~ 3889257 (-) True LOC110507357
XM_021587297.2 mRNA downstream 381208 3881456 ~ 3889254 (-) False LOC110507357
XM_036965217.1 mRNA downstream 516816 3746369 ~ 3753646 (-) False LOC118944719
XM_021587314.2 mRNA upstream 14968 4291400 ~ 4298680 (-) True zgc:162608
NM_001124372.2 mRNA upstream 195619 4472051 ~ 4505458 (-) False drd2a
XM_036964601.1 mRNA upstream 195623 4472055 ~ 4505952 (-) True drd2a
XM_036965012.1 mRNA upstream 273793 4550225 ~ 4562219 (-) False scn3b
XM_036965013.1 mRNA upstream 273793 4550225 ~ 4562280 (-) False scn3b
TU2336663 other downstream 728709 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 867465 3400579 ~ 3402997 (-) True G2042608
TU2335904 other downstream 1371074 2898987 ~ 2899388 (-) True G2041885
TU2335902 other downstream 1374071 2895576 ~ 2896391 (-) True G2041883
TU2333132 other downstream 3499725 769974 ~ 770737 (-) True LOC110507298
TU2337606 other upstream 67167 4343599 ~ 4348409 (-) True G2043460
TU2337629 other upstream 102502 4378934 ~ 4379429 (-) True G2043483
TU2337664 other upstream 137633 4414065 ~ 4414423 (-) True G2043518
TU2339133 other upstream 1264595 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 1592143 5868575 ~ 5870139 (-) False G2045223

Expression Profile