RNA id: TU2337847


Basic Information

Item Value
RNA id TU2337847
length 2014
RNA type TUCP
GC content 0.42
exon number 3
gene id LOC110507374
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4685868 ~ 4692872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAGTGTCTGTTAGTGGGAACGAGACGTCTCTATTGAGGCACGAGATACATCTTTCTCGGTCAAGTACAGGCAAAAGGCATTTTAGGTCAGTTCATCCGAAGACTGTCATCTCTCAGATTGCTCATCATGGACTGCCACATTGAAGAATGCAGCCAAccccaggaggaggaggacatcaTGGACATACCTCTGGATGACCCCGAGGCCAACAAGGCAGCTGCCAAGATCCAGGCTGGCTTCCGTGGTCACATGACCAGGAAGAAGATTAAGCCTTCTGACAAGcctgagggggagggggaggatgaggaagtgagCAGCAGTGGCGAGGCCCTCAACGGAAACCAGGGGGACACAGTATCAGGAGGAtcagagggagtagagagagatgaCACATCTGTGCCGAAACAGTGAAGCCTCTGACCTCaatgaagagaagaagaagaagattttTAAAAAAGAAGAAGGCTGTGGCTGTACCTTTTTTTCCAGGGGAGCAACTTTCTATGTAACACAAAAAAAGCAGTGTATTATCCAGATTTTGGGATGTCATCTGATTTGTGAACTCTTTAACACTCCTGCGTCTTTGACCCAAATTTGCATCTCTCACTGCATGTACTTGTGAAACTTCTGGTAGTGTGCTAGTCTAGAAGAAGATATGCGAGGCTGATAACAATTTTTTCTCATGCTAAACAGGGCTGATTTGAGTCGAATATAAAGTTTGTGTACAATTATACATTATGAATGCACGTCAACCGCTGGAATGCTTGTTTCTGCGTTGTTTCAGGTGCTTGTATAATTACTATTTCATTATTTCTGGTGTACACAATATCGCTAAAAGGGTGGTAGGTACCCTTATGGGTTATTGGAAGGCATACTATTTAAGTTGAtaattaatgtattgttattTAGATTTGTAGACTTTAAGTGTTGTGCACAATAATGAATAATGGAATTACTTTCACATATTAGTCAGCATCACCATTTTCTCCAAATCAGATCTTCCAACACAGTAAGCCTGCAGTACTATAGTTTATTTGCAGATAGTAGTACTCACGTCAAGCTTTATCTTTAGAGAAATAGAGTCATATCCTCTGCTAAACTATTGACCTAAATCAGGTGGTATTATtatcaggggttggaaccaaaattgttttccaatcgtttcgttctgaacagaaccatcatttagagcagcttgctatggagcggGCAAGCTATGGTTGTTTCAGCCGTTAGACTGGGCTACAGTTGTTAACATGCACGATGGACGGTCACATGTAGGGGCATGAGATGCAACTGAAATTTTGCAgctggggagagagcgagaaatgCTGGAGGGGGAGGCTTGACTTGAAGCGCTGGGCATTATTATAACATGCATTATCTGAAGTAGGGCCACATCATTATTCCTACAGAGGAGCGGtttctatggaggaactttgaatgtcgtTGAACTTCCGAGTGTTGGCTTAaagttggaccagagctagctagctagctttctaacaagcttgtgtgtgcagagtggcaccagaataaaaaaaaacatacctttTTTTAGTTAATAAATCCACTGTGAAACGTGATAGTATCTCTAACTAGCATCGAAAAAGTTAATTCATTCTTCTCTAATTATAAATCTGAATTTCTGAATCACGCTTGTaacgtcagtaggctacagtagactaAGCTTCGAAGGGAGAGGGGCAGGTTGcctacacatgcagacacactggtgaagattttcagctggcaggcagacactggaatatgAAAAAAATGCCTGGAATGTAAAATAATGTTATTAATCGGTCACCATGCTTTTAAATGAACTGTCCTGTTCCAGAACGgtatagatcactttcgttcACAGTTCTGATCCTGTTCCtcaattttttttgttattttctggttttcggttctgttccctgaaccgctTCCAACCCCTGATTATCATCATGCTTCATGAACAAATTTAATTAAGTAATTGTAAAGGAATAACAGTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2337708 lncRNA upstream 232717 4452950 ~ 4453198 (+) True G2043559
TU2337313 lncRNA upstream 264547 4419904 ~ 4421368 (+) True ttc12
TU2337332 lncRNA upstream 267684 4417994 ~ 4418231 (+) True G2043200
TU2337331 lncRNA upstream 269087 4416499 ~ 4416828 (+) True G2043199
TU2337330 lncRNA upstream 271166 4414473 ~ 4414749 (+) True G2043198
TU2338068 lncRNA downstream 392505 5083632 ~ 5105824 (+) True G2043904
TU2337917 lncRNA downstream 640006 5331133 ~ 5332221 (+) True G2043754
TU2337918 lncRNA downstream 642116 5333243 ~ 5333478 (+) True G2043755
TU2338220 lncRNA downstream 644190 5335317 ~ 5335626 (+) True G2044047
TU2338889 lncRNA downstream 746865 5437992 ~ 5514824 (+) True cbl
XR_002471094.2 mRNA upstream 11827 4670439 ~ 4674088 (+) True LOC110507259
XM_021587147.2 mRNA upstream 15642 4667537 ~ 4670273 (+) True LOC110507258
XM_021587317.2 mRNA upstream 238662 4437387 ~ 4447253 (+) True ankk1
XM_021587315.2 mRNA upstream 264535 4383264 ~ 4421380 (+) False ttc12
XM_036965313.1 mRNA upstream 324795 4312281 ~ 4361120 (+) True si:dkey-103g5.4
XM_021587323.2 mRNA downstream 4595 4695722 ~ 4703620 (+) False hepacama
XM_021587324.2 mRNA downstream 4607 4695734 ~ 4703620 (+) True hepacama
XM_021587325.2 mRNA downstream 17922 4709049 ~ 4724979 (+) False LOC110507376
XM_021587326.2 mRNA downstream 18222 4709349 ~ 4724979 (+) True LOC110507376
XM_021587328.2 mRNA downstream 52551 4743678 ~ 4773061 (+) True LOC110507377
TU2337325 other upstream 279789 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 1846988 2834096 ~ 2838927 (+) True G2040882
TU2334764 other upstream 1870574 2814276 ~ 2815341 (+) False LOC110507334
TU2334765 other upstream 1870574 2814276 ~ 2815341 (+) True LOC110507334
TU2334749 other upstream 1883914 2799781 ~ 2802001 (+) True G2040863
TU2339431 other downstream 1200720 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 1201896 5893023 ~ 5896113 (+) True LOC110507397
TU2339435 other downstream 1206390 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 1803706 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 2001417 6692544 ~ 6693044 (+) True G2045655

Expression Profile