RNA id: TU2339130


Basic Information

Item Value
RNA id TU2339130
length 2531
lncRNA type sense_over
GC content 0.39
exon number 1
gene id kmt2a
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5531877 ~ 5586139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGATAATCCGCAAACTGTAAGGACATAACCCGGTTTAATGCCTATAGCCACATCAGTGCTCCAAGATTCCCCATGGTAGTGTTGCCTTCATATTAATACCTGTCAATGTTTTATGGTTCTAATCGACTCCCTCGTAAAGTCCAGCATTTGGTTTGTGGCATTTACATGAGACAGGCTACACGTGGAAAGCTTTTTAGAAGCTCCGTAGAAGCTGATTAAGTTAGGAAAGGTTGGACGAGGCTCACCCTTTACCATTGACCACAATGCAACCCCTGTTAAGAGTTCATCAACTCACTTGATCTCTTCGCTTTGCATTTGTTGTAACTGAGCACGCCTTGCTTAGAGAACTCTGACTTGTAACAGTAGTAGATTGACAGAAGTAGTCCCGGTTTTGGTGAGAATGGGGACATTGGGTACAAAAAGTGGATAGGTTGATGACCGGCATATATTTCCTCGAACGAAGCTCACCAAATTGCTGCTTTGTGCAACTCTGGCTCCAGTTGTCCTATAGCGAGCCACTTCAGGCCAGTGACTTTTTTTGTTATGTTTTTGGTTTGTAAAATGAGTTTTTTCCTCGTAGTCTGTTGACTTTATATCTTGTAAGGCCGTCGCAGAATCTCTCCAACCCTTACCCTGCCCAGGCTGTGAAGTGAAACCATAACTTTGCCAACACATTGCACTTGTGACAGGCACTGACTTAACATGGGAAATGACGTTCTACCCATTGTAAACACAATGGGTTCCTATGTTTTAAAAACCACAAGCACAGATGCTGTTTAAGCTCCCTTAGGAATTGTGGCCCCCAGGAAAGTGCACTTCTACTCGACCTTCTCCCAAGTGTGTAAGGGACGTTCAGAGTGCAGGGACCACTCTGGAGGCCAACAGTGAACACTCCTCAACTTCCTTGCAGCCTGGGTTTTGCCAGCTAATTCAGGGATACAGTTTTGGTTCAGCTCTCGCTGTCCTCCCATCCTGGCTAGCCTTAGGGTGAGGCACAGGGTCATGCTGAATTCTGCTGCTAGGTCTTTAATGAATGTATATACAAAAACTAAATTGTGGTGATTTCTGCTATCAACCACGTTTTTGTTTTTGAGTTAAATAGAACCCACAAAAAGACTGGGGAAGATGACCTCACAGGACAGTTTGTTTGTTTCATTGCAGAGGGAAAAAGATTGAGGGACGGCTTTCTAGTTTAACGTCAAAAGGTCACACTGAATAAACTAAGACTTCAAAGATAGCTTTGGTAATCCTTTTACTAATCCCAAAGGCTCCGTCTCTGACTCCTCTACAGATCCATAGCAGTAAAGTGTGACGTTTCAGTACTTGGTGAACAACAACCCATTAGTCAAGTGTTTTTAAATGGCAGATAGATTCCGTTGTTTCTTGGACTTCATAATACCATGCCACACCAGTGGCCCTTTTTCCTTCACTTGTAATTATGCTATATATACATAAAAACATATACCGAAACAGAAATAGTAACATGTACTTCAGTATCTATACAATATACGGAATGAACAGACAAACTTAGTTACAGTAGCAAACAGCAGGTTTGTAATGGTTAATAGCAATGTTCAATGTACTCTATAATGGTTTTATGTTACAGTATCAGTTTAAAATAACTAACGTACATCATCTTTGTATATTGATGTCCAGTACCAGTTTTCCTGTGCCTGTGTATGTTCCATTGGCAGGAGCATTGCAGTTTCtttcacttcttttttttttcttttttttttttgcgaaaAGAAACAGTATTTATGTGATAAGATGTATAACGTGGTTGTGAACTTCTTGAAGTCAGccattttgtttttgtgtttgatTGTTGtagtgaatgttttttttttttttattctttgtAAATTCTTAACAGGGATTTTAGACTGCTTACTTGATGGTGGTATAATTGAGTTGAGTTTGTGGAGAACAGGAAAAAAACAAACTAATCCCACCAAAATGTTATTTTACAGTCTTCCATGTCTCccttaccaccccccccccccctctctttggaAGCTTTGGTTGTACTTATGTCTTGTTTTATAGAAAGTGATAATGATGatacgtttttatttatttattttgtgtaTTGGAACATCCATGAATTTAACAGGTCAAGGTAGTTGCCGGGAACCTGCTTGAAAGAAGTTTGAAAAAAAAATACTTAACTGTATTTGTAATTTTATAATTGTTCCTTGTGTATAGAACTTATCAGCCTGAGAAGGGACGTGGCATCAAGGGGAGTTGGCGGTAGGACTTGGGAACGGTTAAACGGCTCTTCTTACGCCTTGAATATACCTTTTTGTCTTGTTAACACTTCCTCCTGAACTCCATGAGAATAATGATGATTATGATACTATTTTTTTCCCTATTAGTTGTACATCAGTGTTCTCTCATCTGTCACAGAAATGAAGGAAAGTTGAACCACAATAGTGAACCACAAATTACTTAAGGTTGAATGTATAATTAGGAAACACAATTGTACATAACTGTAAAAAGAAAAGTTTCTAATCATGTTTATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339167 lncRNA downstream 14004 5517711 ~ 5517936 (-) True G2044904
TU2339149 lncRNA downstream 50741 5478676 ~ 5481199 (-) True G2044886
TU2339075 lncRNA downstream 83773 5443031 ~ 5448167 (-) True LOC110507384
TU2338881 lncRNA downstream 185797 5345868 ~ 5346143 (-) True G2044635
TU2338865 lncRNA downstream 199767 5331383 ~ 5332173 (-) True G2044623
TU2339180 lncRNA upstream 17373 5551843 ~ 5552045 (-) True G2044914
TU2339181 lncRNA upstream 17681 5552151 ~ 5552425 (-) True G2044915
TU2339134 lncRNA upstream 36449 5570919 ~ 5571272 (-) False kmt2a
TU2339136 lncRNA upstream 49029 5583499 ~ 5585805 (-) True kmt2a
TU2339140 lncRNA upstream 72447 5606917 ~ 5608522 (-) True LOC110507388
XM_021587351.2 mRNA downstream 5140 5522880 ~ 5526800 (-) True c1qtnf5
XM_021587349.2 mRNA downstream 5141 5522880 ~ 5526799 (-) False c1qtnf5
XM_021587350.2 mRNA downstream 5141 5522880 ~ 5526799 (-) False c1qtnf5
XM_021587347.2 mRNA downstream 5143 5522880 ~ 5526797 (-) False c1qtnf5
XM_021587346.2 mRNA downstream 5145 5522880 ~ 5526795 (-) False c1qtnf5
XM_036964865.1 mRNA upstream 57026 5591496 ~ 5613273 (-) False LOC110507388
XR_005039970.1 mRNA upstream 57026 5591496 ~ 5613273 (-) False LOC110507388
XM_021587357.2 mRNA upstream 57027 5591497 ~ 5613273 (-) False LOC110507388
XM_036964873.1 mRNA upstream 84627 5619097 ~ 5634015 (-) True pdzd3a
XM_021587148.2 mRNA upstream 101010 5635480 ~ 5636898 (-) True LOC110507260
TU2337664 other downstream 1117517 4414065 ~ 4414423 (-) True G2043518
TU2337629 other downstream 1152511 4378934 ~ 4379429 (-) True G2043483
TU2337606 other downstream 1183531 4343599 ~ 4348409 (-) True G2043460
TU2336663 other downstream 1990187 3539184 ~ 3541753 (-) True LOC110507356
TU2336713 other downstream 2128943 3400579 ~ 3402997 (-) True G2042608
TU2339133 other upstream 6557 5541027 ~ 5541633 (-) False kmt2a
TU2339541 other upstream 334105 5868575 ~ 5870139 (-) False G2045223
TU2340276 other upstream 698145 6232615 ~ 6235522 (-) True LOC110507410
TU2340414 other upstream 955252 6489722 ~ 6491119 (-) True LOC110507421
TU2340423 other upstream 967945 6502415 ~ 6505948 (-) False LOC110507418

Expression Profile