RNA id: XM_021587363.2


Basic Information

Item Value
RNA id XM_021587363.2
length 3222
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110507391
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5741262 ~ 5751139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACATATCTGTCTCGTTGTTCCATCTGTGCTCGATCTCTTTGGTTCAAGCACACATCGCGCAACTTTTGACGTTCTGAAGTTTTCTACGACAAAGCGAACGAGTGGTTTATCAAGGAAGCAACTCCGCTGGTTGGAGACGTGGCTCGCTTGGCTGCCATATTGAAGTAACTCACATTGAAGCACTACAAGCAACAAGCAGTTTAGCTAGCTATCCAACTATATTTTCTTTCTAAAGGCGCTTTAGATTTACTGGATCTTGACTGAGCAAACACCATCGGAGATTGAAGATCGTTTTCCTAACCATCTGAGATTAAATATCGTTTTCCTAAAGAGAGACCAACAATGGTGCTTTTGGCAGCGGCGGTGTGCACCAAGGCAGGCAAAGCCATCGTGTCACGGCAGTTTGTGGAGATGACCCGGACGCGTGTCGAGGGCCTGCTGGCTGCTTTCCCCAAGCTCATGGGCTTGGGCAAGCAGCACACGTTTGTGGAGACGGAGAGTGTGCGTTACGTCTACCAGCCGTTGGACAAGCTCTACATGGTGCTGGTCACCACCAAGAACAGCAACATCCTGGAAGACCTGGAGACGCTGCGGCTCTTCTCACGCGTGATCCCAGAGTACTGCCGTGTGCTGGAGGAAGGGGAAATCTCAGACCACTGTTTTGACCTGATATTCGCCTTCGACGAGATCGTGGCCCTGGGCTACAGGGAGAACGTCAACCTGGCCCAGATCCGCACCTTCACCGAGATGGACTCTCATGAGGAGAAGGTGTTCCGGGCAGTCAGAGAGACCCAGGAGCGAGAGGCCAAAGCAGAGATGCGGCGAAAGGCTAAAGAGCTGCAGCAGATCAGGCGAGACGCCGAGCGCTCGGGGAAGAAGGTGCCGGGCTTCGGCGGCTTCGGCAATGCTGGGATGAGCAGCATGTCCTCAGGGTCCATCATCACAGACACCATCATCGAACCCGAGAAACCCAAGATGGCTACCGTCCCAGTCAGGCCGACCGGATCCAGCAAAGCCCTCAAGCTGGGCGCCAGGGGGAAAGAGGTGGACAACTTTGTGGACAAgctcaggggggagggggaaacCATCACGTCCAACACAGGGAAAAGGCCTTCGCTTGCGTCCAATGTCCTACCGCCACCAGTTAATGTGGAGAGtgtccacatgaGAGTTGAGGAGAAGATCAGCCTGACCTGTGGACGTGACGGAGGTCTACAGAACATGGAGCTCCTAGGCATGATCACGCTGAGAGTGACCGACGACAAGGTCAGCCGCATCCGCCTGATGGTCAACAACTACGACAAGAAGGGAGTACAACTGCAGACACATCCCAACGTAGATAAGAAGCTCTTCACTTCAGACTCTGTGATTGGTCTGAAGAACCCCGAGAAGTCTTTCCCCCTCGACAACGACGTGGGGGTGCTGAAGTGGAGGCTCCAAAGCACAGACGATGCCCTCATACCTCTAACCATAAACTGCTGGCCTTCAGAGAGCGCTACTGGCTGCGACGTGAACATAGAATATGAACTGCAGGAGGAGAGCCTTGAACTGAACGACGTAGTTATTGCTATCCCAATACCATCTGGAGTTGGGGCACCCGTGGTTGGAGACGTGGACGGAGAGTATAAGCacgacagcagacggaacgttcTAGAGTGGAGCCTACCCGTCATAGATGCCAAAAACAAAAGCGGCAGCCTGGAGTTCAGTGTCGCCGGGCAACCCAGCGACTTCTTCCCCGTCAACGTGTCCTTTGTGTCCAAACGCAATTACTGCGACATACAGGTTGCCAAAGTGACTCACGTAGACGGAGACGCACCAGTGAAATTCTCTTTAGAAACTTCGTTCCTCGTCGACAAATACGAGATCAtgtaaaaacaaaatatatacGTCAAAGCTCCAGAGAAGACAAAATAAATACtcgcctgcctgcccgcctgtgGAACATTTTGAGACTGTACACATCAACAGGATCCAGCCCTTCAAAAGCCCTTCCCGAGGTGGAGCGCAGTATTGGTGTATTTATGTTTGTATGATAGAGAAAAAGatctacagtgtgtgtaaatataGAGTTCAATTTAACGGGCAGCGAAACATGCTGTTATTCGCCGTGGAGAGGCGGGAAGTCAAAACACGATGACTAAAGGGGCAGCAGGGAAGGGAGATGGGTGGTGCTCTCGGTTAAGTGGTGGGGTAGGAACCGTACTAGCTACAGACAGGCATCGGGGACGTGTTCACTAGAACACAAAAcggaaaaagaaaacaaaaaatatatattttctcatTTTGAGGAAAAATAAAATTAGCCTTTCTAATTATataagtccaggtagtccctccctgattcagtcagttttcttccatttggggcctaatgaacatgaccctgttgTGTTGGCTGAGGAGCTAGTCGGTATTCAGCTGGTTCATCTTCCCTGCTATAGAGGTTGAGTAATTAAAATCATCCCCACCTCGAAGAGAGTCATGCATCCTCTACCAGAGACATTTTGTATTTTATACATTGGACCAGATTTTGAAGAAAGCGCCTAGGTGGTCTTTCATGTTTTTGTTTCATAACTGCAGGTTCACCGCAAATCCAttttaatggcacctgtttaccCACTAAaggcattttttttttcattagaTTGATTAATCTCAATATGTAGCTTTAGGTGTTGGCTGTGGTATTGAGAAACTGTTAAGATGGAAAAGAGTAAGCAGCCAATTCACAAGGCAAACCACTGCGTTTGTTGGCTATAGAAGTTCTCGAAAAGTAATCATTTAAAAGCTCCATAGCAAGCTCACCGTTTTACTATTTACAAATGTATCAGTTGTTGAAAAGGAAGAGGCGATCAATATACTGTGGTTCATATCAAACAACCATCAATAGAGGGAATACTTTGGTCCTACTGCGAGGAGGACTCTCCTGCCAGTGACACCACCTCCCTCTGATGACTCCAGTCATTTACTCCCATAATGAACGGATGCTCTTTAAAACCCACTTAATCAAAAGGACAACATGTAGTGGTTTCATATGTTTTGGTTTTGATGTTTTGTTTGTATTCCCAGAATTTCAATGCGGTTGGTTGGATAATGGGGTTTGAAGATGGCTAGATGGGACATTTTATCTGTAAAGAAATACAGATGGGGAATCGTAACATTCCAGTATAAAATGTGAAGCAAAAAATCTTTAATTAATTAAAGTGTATTATTCAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339218 lncRNA upstream 103545 5637518 ~ 5637717 (+) True G2044952
TU2339216 lncRNA upstream 103955 5637074 ~ 5637307 (+) True G2044950
TU2339197 lncRNA upstream 122839 5618072 ~ 5618423 (+) True G2044931
TU2339193 lncRNA upstream 125024 5615254 ~ 5616238 (+) True G2044927
TU2339042 lncRNA upstream 128021 5611277 ~ 5613241 (+) True G2044792
TU2339388 lncRNA downstream 21547 5772686 ~ 5773445 (+) True G2045111
TU2339391 lncRNA downstream 25190 5776329 ~ 5776567 (+) True G2045114
TU2339383 lncRNA downstream 44858 5795997 ~ 5796497 (+) True G2045106
TU2339401 lncRNA downstream 63157 5814296 ~ 5814770 (+) True G2045124
TU2339413 lncRNA downstream 69149 5820288 ~ 5820689 (+) True G2045130
XM_021586933.2 mRNA upstream 229514 5505817 ~ 5511748 (+) True LOC110507053
XM_021587339.2 mRNA upstream 302198 5375556 ~ 5439064 (+) False cbl
XM_021587341.2 mRNA upstream 302198 5375556 ~ 5439064 (+) False cbl
XM_036965131.1 mRNA upstream 410339 4879928 ~ 5330923 (+) True LOC110507051
XR_005040114.1 mRNA upstream 430256 5310954 ~ 5311006 (+) True LOC118944797
XM_036964875.1 mRNA downstream 5468 5756607 ~ 5764256 (+) False LOC110507055
XM_036964876.1 mRNA downstream 5470 5756609 ~ 5764256 (+) False LOC110507055
XM_036964874.1 mRNA downstream 6461 5757600 ~ 5764256 (+) True LOC110507055
XM_021587364.2 mRNA downstream 18473 5769612 ~ 5794438 (+) False LOC110507392
XM_036964869.1 mRNA downstream 25880 5777019 ~ 5794438 (+) False LOC110507392
TU2337845 other upstream 1048390 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1050135 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1050135 4685915 ~ 4691127 (+) True LOC110507374
TU2337325 other upstream 1335136 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 2902335 2834096 ~ 2838927 (+) True G2040882
TU2339431 other downstream 140708 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 141884 5893023 ~ 5896113 (+) True LOC110507397
TU2339435 other downstream 146378 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 743694 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 941405 6692544 ~ 6693044 (+) True G2045655

Expression Profile