RNA id: XM_021587364.2


Basic Information

Item Value
RNA id XM_021587364.2
length 4640
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110507392
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 5769612 ~ 5794438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATCCCCTCCACACCCAGATACAGATAGATATCTCACTAAGACTCTTGTTCCCAGCCTAACAAAAAAGGATAAACAACAGGTTATTGGCAGACACTTGACTGATGATATGGGACATTCAAACATGTGCCTATAATTGTCATTCATCATTGGCAACAATGAGTGGAGCACGTGACTCATGTGTTACTTTGCTGCACAGTGCGAATTGTTTCAAATTTGATACATCTTGGAAGGTGTGACTTGTGCGCTACTACTACCGTGTACAGAATGGGTCAAACGTGTTGTGGTCTCTCGTACTCCACCGCCGCTCCAGGCAAAGCGAAATGGAAACCAACAGAAACACCCAAACTACTCCCTATCCGCAGATTTACCCGTGAGGAGCGAAGGTGTGACCGGTTTTACAGGAATCGGATGAAAACGAAGCAGTTGCCTTCGCCAGGCACAGGTCAACCAGAGGTAGGGCTGGTAATCGGATCTAGAAATTCGGAAACCCTTCGTGGTAACGGGCGAGGGAAGTTGTTGCGAGGCCAGACTGAGTCGGAGGTAGTGGACCACACCGCCGAATACCCATCTGGAATTCATTATGAAAATATTCAGGCTCTCGACTGTGACGCTGTGAGCAAGGGAGCGGCCGACTCGTCCTTCGATGCGACGGGCTTGGAAACACGGTCCAGAGGATTCGACAGAACTCGCTGCGCAGTTACGCAGCGCAGCGGCCCAGAAACAACGGGAGAAGACCATGTCTGGAATGCCCCGGCGAGGGCCATGGAAAACAAACCATTCGGATTTGATAAAGAGGGTGGGGTTGCCTCGGAGGTCAGCGGGGTATCGGGGGCTGTACAACCGGATGGTTCAGTCCATTGGCGCACATCTGGCAATGAGAATTTAAGACGGACCCTGACATCACTGAGCTTGCGTTTGGACGAACCTCTGACAAACGGCGTGTCAGAACCGATAGGGTATGATTTACCCCACACAGAGGTAGAAATGACCAAATCTAACTTTCTCACTGCTTCCCGTGAGCCCGAAGCTGTCAGGAAAAATGATCAAAACAGTTGTTCAGTTGAGTCGGGGAACCAGGAGGACCCCTCGATCAACTCTCCAATACAGCCACACGGACAGGTCCAAAGTCCACTAGGCAGCCAAAGTTTCCCCGGTACTATCCCAAAGCTTATTATAACCAGAGATCTAAGCCCCAGTCGGACCCAGGAAACACTAGATCCAAGGACCATGGGACTCGGAGTCGGTGGATCATCGCTGGGCCCACACGCCGATGATGAGTCCCCATGCTCGGACAGTGGCTGCGGAGGCTCCCCGGCGCTAATGCGCTTTCACAGAAAGCTCTCCAACTCGTCCTCCGCCGGCTGCTTGTCCTCCGCCTCGTCCTTTGAGGAGTCCGAGGATGACTTCAACGGCAGCGACATCGAGCCCAGCCTGTCCCCAGTCATATGCAACACGCTGGGCAGCCCAGACGAAAGCACGGGGACCAAGCAGTGGCAGAAGCTGAAAACTATGGTGCACTGGTCTCCCTTCGTTGTGTCCTTTAAGAAGCGCTATCCCTGGGTGCAGCTCGCCGGGCATGCAGGTAACTTCCAGGCGGGGGAGTATGGGCGTTTGTTGAAGCGCTACTGTGAGTGTGAGCAGCTGTGCCTGTCGAAGCTGATGGGGGACACTCTGCGGCCGTATGTCCCTGGCTACTACGGCGTGGTGCAGAGGAACGAACAGGACTACAACCTAATGGACGACCTCCTGGCTGACTTTGACTCTCCCTCCATCATGGACTGCAAGATGGGCAGCAGGACTTACCTGGAGGAGGAGCTACTGAAGGCCAGGGAGCATCCGCGGCTCCGCAGGGACATGTATGAGAAGATGGTGGCCGTGGACCCCGGGGCCCCTACGGATCAGGAGAGATCCCAACAAGGCATCCTGAAGCCCAGATACATGCAGTGGAGAGAAACCCTCAGCTCCACTGCCACCCTGGGCTTCCGCATCGAGGGCATCAAGAGAGCAGACGGGACGTGTAACACCAACTTTAAGACGACCAAACACAGAGAGCAGGTCATGCAGGCCCTGGGAGACTTTGTGGATGGGAACATTCAGACCCTGaaACTCTACCTGCAACGTCTTAAAGATCTGCGATCCGTGCTGGAGAAATCCCAGTTCTTCAGAACAcatgagGTGGTGGGCAGCTCCCTGCTGTTTGTGCATGATGCGTCGGGGCAGGCCCGTGTGTGGATGATAGACTTTGGGAAGACGGTGCCCCTGCCTGCCCTCCTCACCCTGGACCACCGGACCCCCTGGATGGAGGGCAACCACGAGGATGGCTACCTGTGGGGTCTGGACAATCTCATAGACATTCTCAGTACCATGCTCCCCCCCAGcccttgagagagggagagggccgTGTGAGAGAGAACAAAGGGATGGCCtggaagagggagaaaaagaggatggagagaacacTCTCATCTTTGTCAGAGCAGAGGATGTAGTTGGGGACGAACAGATGGAACTGGTCATTACCCAAACTAGATGTGACactggagagatgaagggaaaggACGATGACTgcaaaagagagcgagggagcacACGGAGCATGGTGGACAGAGTGAGGAAACCTGTCCACACAACCAGTGGTGTGTCATCCCTCATCAACTTCTCTCATTATAAGAGCTATGACGTCAActatcactgacacacacacacacacgcacacacacacatgcacacacactaccTTCATATTATCACAAGTATGATGATAATGTACTGGACGTTTCCAATGGGATATATCCTCCTCAAGTGACCTTAGAGGAGCAATGTTTTATTTTCACTATGGACCATTTGACTTTATGCTTTTAAaactattttatatatatatatatatgtcaacACTAGAAACACTGGAAAAACATGTATATTTTTCAACTTTATCCGGTGCTCAGCCTTTTAATGTAAATacattgtattttgtatttaatttGTTTGCCTTCACAAATAGCCTCTTTACTCTTTGTACTTTTTTTTCTGTGCCTAgatagttttttgttgttgtttttttgaatCATTCCAAAGTTTGCTGGAGAGTTAACCCAAAGTATGAACTGATGTCTGtaacatatttattttttttctatgGTGAAAACTGGAGGATGTTGTTGATTAGTCTGACCCGCGTGGTGTCTGATTGGCGGAGTTGACCCAGCAGATAAACTAACAGTgattcccaaccaggggtactaggacccctgggtGTACTTGGTCTATAGACTCCGGAGACCATAGgactactggtaaaatgcacatgagggggtgCTTCAGGGGTACTCTGGGCAGAGCAACGTTCAGTTGGTGGTACGGTAACctgaaaaaggttgggaaccactgaacTAACAGATGGGATAAATGTTTTTTCTTCTTTAATTTCCCTCCTAGTGGGCACATGCCTTGGTGGTCACGATAACTAGACTGTATTGCACAAATGGGTACCTCACAAAAGCCATTGAACAAAACTAGTCCTGCCTGTGTGTCCCTGAATATGGATTCACTCTGGTGTCCCAGGTTCTTTATAAGCAAACTATTTTCTGGTGAGTGGCAGTTGACTCATCTGTATAATTGTGATCATTATTCCTTTAGTTCAATGATACTTACTTTTTCTGAGATGGGTAACGATTGGCCTGACAACTGAAATGACTAGTTGAACAAGTCACCTGAAACTGGAATGAATGAGGAGCTGATTCTTATGACACGTTCATCCACACGTCAGACTTTAATGTGAATCTGATTTAATATAGAATCATTGCTATCAAAGACGACATTGTGGTGACtattttttctttttcttctaatTGAAGGCGGGTTCTGCATCTGCCCTTGTTTTGGTACACTTTTTTTCTTTCGAGATAATGTTGGTTTAACACTGCCATTCCTCTGTAAGTTTAGATATAAATATGCAAACACAAACTCACATAATGACAGtcgtcagttttttttttttttatgcgtTTCTGCCAGTGACTGTATTTGACACCTTTTCTGAACGGTGTCAGGTCTTGTGTCTCTGGATTTGTAGATCTGTCAGGCAACATTCCCATCCAAGTCTCACTCCATATTCTTCAACAGAGTCCGACAAcacagtttgtgtgtttgtggtgtgagCAGATTTCTCTAGCTAGGAAATAGAGGGGTTCTGTGTGTGACCGATTATGTGACTGTCAGCATTGACATCGCCGAACTGGAATCCTGTTTCTACTGTTGACATCTCGCAAATATTCCACACCATAAAAAGCACACATTCTGGAAGTATATGTATTGAACAATGTATTGTTTACAAAGTATGTCTTTACGTACCATGTATCCTCTTCTTGATCTTAACCTGACTGTTACCAGCTTTCGGACTGCTTGGGTTGTTGTGTGTGGCTGAGAGCTGGACTGTGTATTAAGGGTAGGCCTAAGATGTATATTTTATAGTTTGGGTAAGCCCTTCCGCTGTGCTGTACTTCAGGAGACCGTGCATTACAAGATGCTGGGGCACAACAAATATGAATGTTAAGAGGATTGAGACGGGTCCTTGCTCTCTTTGTCTAGAATACCATTGATTGCAATAAACTGGAACTAAGCTCAAGTCTTTCTAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2339218 lncRNA upstream 131895 5637518 ~ 5637717 (+) True G2044952
TU2339216 lncRNA upstream 132305 5637074 ~ 5637307 (+) True G2044950
TU2339197 lncRNA upstream 151189 5618072 ~ 5618423 (+) True G2044931
TU2339193 lncRNA upstream 153374 5615254 ~ 5616238 (+) True G2044927
TU2339042 lncRNA upstream 156371 5611277 ~ 5613241 (+) True G2044792
TU2339383 lncRNA downstream 1559 5795997 ~ 5796497 (+) True G2045106
TU2339401 lncRNA downstream 19858 5814296 ~ 5814770 (+) True G2045124
TU2339413 lncRNA downstream 25850 5820288 ~ 5820689 (+) True G2045130
TU2339415 lncRNA downstream 29244 5823682 ~ 5823882 (+) True G2045132
TU2339416 lncRNA downstream 31098 5825536 ~ 5825771 (+) True G2045133
XM_036964875.1 mRNA upstream 5356 5756607 ~ 5764256 (+) False LOC110507055
XM_036964876.1 mRNA upstream 5356 5756609 ~ 5764256 (+) False LOC110507055
XM_036964874.1 mRNA upstream 5356 5757600 ~ 5764256 (+) True LOC110507055
XM_021587363.2 mRNA upstream 18473 5741262 ~ 5751139 (+) True LOC110507391
XM_021586933.2 mRNA upstream 257864 5505817 ~ 5511748 (+) True LOC110507053
XM_036964877.1 mRNA downstream 4175 5798613 ~ 5801513 (+) True snrpa
XM_036964866.1 mRNA downstream 28208 5822646 ~ 5870186 (+) True LOC110507396
XM_036964871.1 mRNA downstream 80253 5874691 ~ 5896125 (+) False LOC110507397
XM_036964870.1 mRNA downstream 80253 5874691 ~ 5896127 (+) False LOC110507397
XM_036964872.1 mRNA downstream 80253 5874691 ~ 5896127 (+) False LOC110507397
TU2337845 other upstream 1076740 4685915 ~ 4692872 (+) False LOC110507374
TU2337846 other upstream 1078485 4685885 ~ 4691127 (+) False LOC110507374
TU2337847 other upstream 1078485 4685915 ~ 4691127 (+) True LOC110507374
TU2337325 other upstream 1363486 4405458 ~ 4406126 (+) True G2043193
TU2334775 other upstream 2930685 2834096 ~ 2838927 (+) True G2040882
TU2339431 other downstream 97409 5891847 ~ 5896113 (+) False LOC110507397
TU2339420 other downstream 98585 5893023 ~ 5896113 (+) True LOC110507397
TU2339435 other downstream 103079 5897517 ~ 5907239 (+) True LOC110507398
TU2339902 other downstream 700395 6494833 ~ 6495134 (+) True G2045522
TU2340040 other downstream 898106 6692544 ~ 6693044 (+) True G2045655

Expression Profile